Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0171 ATGGTGAAGTTCCTCAAGCAAAACAAGGCCGTCGTCGTCCTCCAGGGGCGTTTCGCCGGTCGGAAGGCGGTGATTGTCCGCTCTTTCGACGACGGAACCCGCGATCGGCCGTATGGGCACTGCCTTGTCGCCGGAATTGCCAAGTACCCGAAGAAGGTGATCCGGAAGGACTCTGCGAAGAAGACGGCGAAGAAGTCGAGAGTGAAGGCTTTCATCAAGCTCGTCAACTACAACCACCTGATGCCCACTCGTTACACCCTGGACGTGGATCTCAAGGACGTAGTCACCGTCGACGCACTTCAGAGCAGGGACAAGAAGGTGACGGCGGCCAAGGAGACCAAGGCCAGGTTCGAGGAGCGGTTCAAGACTGGGAAGAACAGTTCACGCGCTTGTTCGAAATTAATGGAACCCCCTTTTTCAGATGCTTTTGGAAAACAAGTGGGATGGACTCCTTTATACCTTTTTTCGTGA 471 0.5456 MVKFLKQNKAVVVLQGRFAGRKAVIVRSFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRVKAFIKLVNYNHLMPTRYTLDVDLKDVVTVDALQSRDKKVTAAKETKARFEERFKTGKNSSRACSKLMEPPFSDAFGKQVGWTPLYLFS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0171 156 PANTHER 60S RIBOSOMAL PROTEIN L27 1 127 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vvi1g0171 156 Pfam Ribosomal L27e protein family 52 127 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vvi1g0171 156 SUPERFAMILY Translation proteins SH3-like domain 3 113 IPR008991 -
Vvi1g0171 156 CDD KOW_RPL27 6 88 IPR041991 -
Vvi1g0171 156 Gene3D - 1 136 IPR038655 -
Vvi1g0171 156 FunFam 60S ribosomal protein L27 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0171 Vvi-Chr1 1587196 1587908 Dispersed