Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0156 ATGTCTCTTTGCTTTTCTTCAAGCCTCTCTCTTCCGCAGCCGTCTTTCTTTTCTAATCTGAACGGGGAGCAAAGGGTTTGTGGGTTATGGAGAAATCCGCGGATTTTTAGGAGTTTGCGGGTCAGAGCTGGCCCCAAGAGGATATCTTTTGACAGAGAATGTAGGGAGGGCTTACAAGCTGGGATAGATAAGCTTGCTGATGCTGTTTCTCTTACCTTAGGACCCAAAGGACGTAATGTGATTCTTTCTGAGGCCGGAACATTAAAAGTGATCAATGATGGGGTGACAATTGCTCGGGCTATAGAGCTTTCGGATGCAATTGAAAACGCAGGAGCAACGCTTATGCAAGAGGTTGCAAGTAAGACAAATGATGTGGCAGGTGATGGTACTACGACTGCTATCATTTTGGCTCGGGAAATGATCAAGTCTGGTTTGTTGGTGGTCGCTTTTGGAGCTAACCCAATTGGTTTGAAGAAAGGAATGGATAAGACTGTGAGAGAATTGGTCAAGGTTTTGAAGAAGAAAAGCTTTCCTGTAAAAGGGAGGGATGATATAAGAGCTGTGGCCTCAATTTCTGCTGGAAATGATGACTTCGTTGGGAATTTAATTGCTGAAGCTATAGATAAAATTGGCCCTGATGGAGTAATCTCCATTGAATCATCCTCATCGTCTGAAACCTCTGTTATAATTGAAGAAGGAATGAAGATCGACAAAGGTTATATGTCACCCCACTTTATCACAAACCAGGACAAATCTATTGTGGAGTTCGAGAATGCTAAAGTTCTTGTAACTGATCAAAAGATTTCAACCATCAAAGGAATAGTTCCTTTACTGGAAAAGACTACCCAACTGAGTGTCCCACTGCTAATCATTGCTGAGGACATCTCAAGTCAAGTACTTGAAACACTGGTTGTGAACAAAATGCAAGGAATAATTAATGTTGCTGTGGTCAAATGTCCAGGATTTGGAGAAGGAAAGAAAGCTTTATTGCAAGATATAGCCCTTTTGACAGGTGCTGATTTCCTCTCTGGAGATTTGGGACTGACTCTTGACAGTGCAACGTCAGATCAGCTTGGCATTGCAAGAAAAGTAACCATAACAAGCAATTCAACAACCTTTGTTGCTGATCCTTCAACTAAACCTGAAATACAGGCAAGAATTTTGCAGATAAAGAAAGATCTCGCTGAAACTGATAGTTCGTATCTTTCAAGGAAGCTCTCTGAAAGGATTGCTAAACTCTCTGGTGGTGTGGCCATAATCAAGGTAGGAGCACATACAGAGACGGAACTCGAAGATCGGAAACTCAGAATTGAGGATGCAAAGAATGCAACGTTTGCTGCCATGGATGAAGGTATAGTACCTGGTGGTGGGGCTACCTATATTCATCTGGAAGAACAGATACCCATCATAAAGCACTCCATGGAAGATCCGGACGAGCAGATTGGTGCTGACATTGTGGCAAAGGCACTTGCTGCACCAGCCAAAGCAATTGCAACTAATGCAGGAGTTGATGGAGCTGTTGTCATAGAGAAGATCCGGACTTGTGACTGGAGAACAGGGTATGATGCAATGACGGGTAGATACCAAGATCTTCTCAATGCTGGAGTGGTTGATCCCTGTCGGGTCTCAAGGTGTGCCCTTCAAAATGCAGTATCTGTTGCTGGCATTGTTCTAACAACCCAAGCTGTATTGGTGGAGAAAACAAAGCCGCCCAAGTCAGCAGTTCCTCGTCTCCCTGGAATAACTCCTTAA 1752 0.4355 MSLCFSSSLSLPQPSFFSNLNGEQRVCGLWRNPRIFRSLRVRAGPKRISFDRECREGLQAGIDKLADAVSLTLGPKGRNVILSEAGTLKVINDGVTIARAIELSDAIENAGATLMQEVASKTNDVAGDGTTTAIILAREMIKSGLLVVAFGANPIGLKKGMDKTVRELVKVLKKKSFPVKGRDDIRAVASISAGNDDFVGNLIAEAIDKIGPDGVISIESSSSSETSVIIEEGMKIDKGYMSPHFITNQDKSIVEFENAKVLVTDQKISTIKGIVPLLEKTTQLSVPLLIIAEDISSQVLETLVVNKMQGIINVAVVKCPGFGEGKKALLQDIALLTGADFLSGDLGLTLDSATSDQLGIARKVTITSNSTTFVADPSTKPEIQARILQIKKDLAETDSSYLSRKLSERIAKLSGGVAIIKVGAHTETELEDRKLRIEDAKNATFAAMDEGIVPGGGATYIHLEEQIPIIKHSMEDPDEQIGADIVAKALAAPAKAIATNAGVDGAVVIEKIRTCDWRTGYDAMTGRYQDLLNAGVVDPCRVSRCALQNAVSVAGIVLTTQAVLVEKTKPPKSAVPRLPGITP* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0156 583 ProSitePatterns Chaperonins cpn60 signature. 446 457 IPR018370 GO:0005524|GO:0006457
Vvi1g0156 583 NCBIfam chaperonin GroEL 45 569 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 37 574 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 SUPERFAMILY GroEL equatorial domain-like 49 563 IPR027413 -
Vvi1g0156 583 Gene3D - 178 451 IPR027410 -
Vvi1g0156 583 Gene3D GroEL 233 414 IPR027409 -
Vvi1g0156 583 SUPERFAMILY GroEL-intermediate domain like 178 247 IPR027410 -
Vvi1g0156 583 Pfam TCP-1/cpn60 chaperonin family 65 567 IPR002423 GO:0005524
Vvi1g0156 583 Gene3D - 48 564 IPR027413 -
Vvi1g0156 583 SUPERFAMILY GroEL apical domain-like 226 417 IPR027409 -
Vvi1g0156 583 FunFam 60 kDa chaperonin 233 414 - -
Vvi1g0156 583 PRINTS 60kDa chaperonin signature 439 460 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 PRINTS 60kDa chaperonin signature 391 416 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 PRINTS 60kDa chaperonin signature 69 95 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 PRINTS 60kDa chaperonin signature 309 332 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 PRINTS 60kDa chaperonin signature 124 151 IPR001844 GO:0042026|GO:0140662
Vvi1g0156 583 CDD GroEL 46 566 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0156 Vvi-Chr1 1508271 1513345 Dispersed