Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0154 ATGGGTCAGAAGTCTCTCATCTACGCCTTCGTGGCTCGTGGGACTGTGATTCTGGCGGAGTACACTGAATTCAGCGGCAATTTCAATTCCATTGCCTTTCAGTGCCTTCAGAAACTCCCCGCCACCAGCAACAAGTTCACCTACAATTGCGACGCCCACACCTTCACTTACCTTCTCGATAATGGCTACACTTATTGTGTGGTTGCAGATGAATCAGTAGGAAGACAGGTTCCCATGGCTTTCCTGGAACGCATCAGAGATGACTTTGTTGCACGATATGGGGGTGAGAAGGCTGCCACAGCTCCTGCAAACAGCCTTAACAAGGATTTTAGTTCAAAATTGAAGGAACACATGCAGTACTGTGTTGATCATCCCGAGGAGATAAGCAAGCTTGCGAAGGTGAAAGATCAGGTTTCAGAAGTTAAAGGTGTTATGATGGAGAATATTGAGAAGGTTCTAGACAGAGGGGAAAAGATAGAGCTTCTGGTGGATAAGACTCATAACCTTCATGAACAGGCACAAGATTTTCGGAGTGCTGGAACCAAAATCCGGCGGAAAATGTGGCTGCAGAACATGAAGATCAAACTCATTGTGTTGGGGATTCTGGTAGCCTTGATCCTCATCATAGTCCTCTCTGTCTGCCATGGCTTCAACTGCGGGAAGTGA 666 0.4685 MGQKSLIYAFVARGTVILAEYTEFSGNFNSIAFQCLQKLPATSNKFTYNCDAHTFTYLLDNGYTYCVVADESVGRQVPMAFLERIRDDFVARYGGEKAATAPANSLNKDFSSKLKEHMQYCVDHPEEISKLAKVKDQVSEVKGVMMENIEKVLDRGEKIELLVDKTHNLHEQAQDFRSAGTKIRRKMWLQNMKIKLIVLGILVALILIIVLSVCHGFNCGK* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0154 221 FunFam vesicle-associated membrane protein 727 1 127 - -
Vvi1g0154 221 Gene3D Longin domain 1 127 - -
Vvi1g0154 221 Gene3D - 128 214 - -
Vvi1g0154 221 CDD Longin 7 121 IPR010908 -
Vvi1g0154 221 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
Vvi1g0154 221 SUPERFAMILY SNARE fusion complex 125 192 - -
Vvi1g0154 221 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Vvi1g0154 221 SMART Longin_2 31 113 IPR010908 -
Vvi1g0154 221 Pfam Synaptobrevin 129 215 IPR042855 -
Vvi1g0154 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Vvi1g0154 221 FunFam Vesicle-associated membrane protein 726 128 214 - -
Vvi1g0154 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016020|GO:0016192
Vvi1g0154 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016020|GO:0016192
Vvi1g0154 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016020|GO:0016192
Vvi1g0154 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Vvi1g0154 221 CDD R-SNARE 130 188 - -
Vvi1g0154 221 PANTHER SNARE PROTEINS 3 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0154 Vvi-Chr1 1500765 1504186 Dispersed/Transposed