Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0149 ATGGTTTTTCTTTTCTCTGGAAGAATGATTTTTTCTGTTGGTTTGGGTGCTTCTGCTTCCAAATCCATGGCTGCGATGACCTCCTCCTTTTCTATAATGAGGTACACTGCATCAACAACAACAAGGGCTGTTAGGGTTTTGGGGACTGCAAAACCCTCGGCCTCAATCGTCAATTTCAGGAGATCCCTGTGTCGGATTAGTGCTACAAACAATGAAGAGGCTACTGCCAAAGCTGCTGCAGCCAATGCCGACAGTGGAGCTCCAACCATATTTGACAAGATTATAGCTAAGGAGATTCCTTCAACCATTGTGTATGAGGATGAAAAAGTTCTAGCATTTCGGGATGTCAACCCACAAGCTCCAGTTCATGTTTTAGTCATTCCAAAGTTAAGAGATGGATTGACACAGCTTGGAAAGGCTGAAGTAAGACATGAACAGATACTGGGTCAACTTCTCTATGCAGCCAGATTAGTGGCAGAGAAAGAAGGTGTTCTTGATGGGTTTCGTGTAGTCATCAATAGTGGTCCGGATGCCTGTCAATCTGTGTATCATCTCCACTTGCATGTACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGA 603 0.4478 MVFLFSGRMIFSVGLGASASKSMAAMTSSFSIMRYTASTTTRAVRVLGTAKPSASIVNFRRSLCRISATNNEEATAKAAAANADSGAPTIFDKIIAKEIPSTIVYEDEKVLAFRDVNPQAPVHVLVIPKLRDGLTQLGKAEVRHEQILGQLLYAARLVAEKEGVLDGFRVVINSGPDACQSVYHLHLHVLGGRQMKWPPG* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0149 200 PRINTS Histidine triad family signature 90 106 IPR001310 -
Vvi1g0149 200 PRINTS Histidine triad family signature 111 129 IPR001310 -
Vvi1g0149 200 PRINTS Histidine triad family signature 180 190 IPR001310 -
Vvi1g0149 200 Pfam HIT domain 97 194 IPR011146 GO:0003824
Vvi1g0149 200 CDD PKCI_related 88 192 - -
Vvi1g0149 200 ProSitePatterns HIT domain signature. 173 191 IPR019808 -
Vvi1g0149 200 ProSiteProfiles HIT domain profile. 90 200 IPR011146 GO:0003824
Vvi1g0149 200 FunFam Histidine triad nucleotide-binding protein 1 56 200 - -
Vvi1g0149 200 Gene3D - 69 200 IPR036265 -
Vvi1g0149 200 PANTHER HISTIDINE TRIAD HIT PROTEIN 63 200 IPR001310 -
Vvi1g0149 200 SUPERFAMILY HIT-like 88 199 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0149 Vvi-Chr1 1423243 1425168 Dispersed