Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0147 ATGTCATTCAACAAGTCTCCTCTTTCAAGGCTTAAAAGGAGTCTCTCCCTTCAATCATGCTTCCCTGAAGTGAGGTCTGCAGAGGCATCTGGTTGCAAATCTCCTGATGACAATGCCTCAAGCGTAAATGGTGGACGTTCTTTTGATGACATACGTCATAATGTTGATACCTGCTTGGACATAGATGATCAGGGCATTTCCCCAGCTTCCAGTGGTGGCAAAACCTCTACTGCATCAAGGCGTATATTCCCTCTAGAAAGCAGGAGTCCGTGCAGATCAGTTTCTGATATCCAGAACTCTAAGTCTGAACTGCTTCAAGCTGTTCCAGAGGCAATTGGAAGTGATGCCCATGTGGCTTTGGATCTGTCCTCTTGGCCAGGTGGTTCCACCCACCCCAAGAATGAAACCAGCAAATCTGATGCAAGCCCAGTTAGACAAGCTGTGGATCATAGTTTTCCATTGGCTTCAGTGCATTATTCAGGTGCAATTTCTGGGGAGATAAGAAGCAATGGCCTTAAAGCATATGTTCTCCTGTGTCTTGCTGCACTCAATGGTGATTGGAAAAGTGCAAAAGCATTCCTGGAGTCAAATCCACAAGCAGTGAGAGCGAGGATCACAAGGCGTTCAGAAACTGCTCTTCATATTGCTGCCGGGGCAAGACATACAAGGTTTGTTGAGGAGCTAGTTAAATTAATGAAACCAGATGACTTGGCATTGCAGAACAAGGTTGGAAACACTGCTCTTTGCTTTGCTGCTGCATCTGGAATCACAAGGATTGCTGAGGTAATGGTGAATAAGAACAGGGAGTTACCAATGATTCGCGGTAGTAAAGGAGTAACACCACTCTACATGGCTGCATTAGTAGGTCACAAAGACATGGTAAGATATCTCTACTCTGTGACTGAGGAAGATAATTTAACCAAAGAAGATCGCATTGGACTTCTTGTTGCTGCTATTACTGCCAATCTATTTGTTCCAGGTTTCAAGTCAGTTTATGACAAGAAATTGATGCATATCCAGGCACTTGAGCTTGTCCAGCAACTTTGGGACAAAATTCTGTCCCTGGATCATGACCCAAAGATTGGGGAGTTAATCAGAACTCCTTCACGGTTACTATTTACTGCTGCTGAGTTGGGGATTGTAGAGTTTATAACTGTCCTCATCCGATCATATCCTGATCTTATTTGGAAAGTCAATGACCAAAGTCAAACTATATTTCATGTTGCAGTGGCACATCGCCAGGAAAAAATTTTTAATCTCATATATGAGATTGGTGCTCATAAGGATTATATTGCAGCATATAAAGACGAGAAGAACAATAACATGTTGCATTTGGCAGGAAAGTTAGCACCATCGAATCGACTGAAAATTGATTCTGGTGCAGCCTTTCAATTGCAAAGGGAATTGCATTGGTTCAAGGAGGTAGAAAAGATTATTCAACCTTCATACACAGAAATGAAAAATGAACAGGGGAGAACACCTCAGATTCTGTTTACAGAGGAGCACAAGGATTTAGTGCGAGAAGGTGAGAAGTGGATGAAGGATACTGCATCTTCATGCATGGTTGTTGCAACACTCATTGCCACTGTGATGTTTGCTGCTGCCTTCTCTGTACCTGGTGGCAACGATGATGACACAGGCAGGCCTATTTTCCTAACAAAAAAGTCCTTTTTGGTTTTTGCCATTTCAGATGCACTTGCTCTGTTCTCCTCTGCCACCTCAATATTGATATTCCTGTCCATTCTCACCTCACGCTATGCTGAGGAAGATTTCCTTGAGTCACTACCCAACAGGTTGATAATAGGCCTTGCAACCCTCTTCATCTCTGTTGCCACCATGATGATAGCTTTTTGTGCCACTCTTTTTATTGTTCTTGGTCCAGAATTAGTGTGGGTTGTGTCTCTCAGGAGGGACAGAGACAGAGAGAGAGAGAACGGAGAAGAGAGAGAAGAAACGACCCTCATCATCCACCGCCAGGGTAAGGGAGTTGGGCTTTATACGATGGCGGCGGACAGTAGCTCGGTTGATGTGATTCTCGATTTTCTGCGGAGAAATCGGTTTACTAGAGCGGAGGCCGCATTGCGGAGCGAGCTCGGTAACCGCCCTGATTTGAATGGCTTTCTTCAGAAGCTAACCCTAGAGGAAAAGGCTGATTCGGGTAATGTGGCGGGGGTGGAGGCTGCGAATGGGGATGGTTCTCAAGCACAGGGGTCGGGTTCGAAGGAGCTTGTAATCGTTAAAGAGATAGAGTGTGGGGAGAGGAATAAACCGCCTAGTGGGGATGCCACTAACATGAGAAGTGAAAAGAACTTCGCGTTTTCTAAGGGTTCGGAGGACACTGTGCTAGACTTGTATACTTGGAAATTCAATGCGGATCCATACCGGAACGAAGGTGGCAGTAGTGGTGTTAGTACCAAAAACAATAGCAACAGCAACAGCGTTTTGGAGCTGCAGGTATATGAACAATCTAGGTATCGAATTGGTGAGCTTTCTGATGCCGTTGCTAGTAAAGCCGACGCGAAATCCGGAGAAGAAGAGATTGGTTTTTCTGGTGAGAAGAGAGGTTCTTGGGTTGGAAGTTCTAGTGAAGTAACCACGGAGACAAACAAGTATGACCGAAAGGAACTTGATCAGAAACTTAAAAGTAGTAATAGTATCTTGTACTCTAAAGGCAACTTTGCTGATAATCCATGGTCAGAGCCCATGCATTCATCTTCAGACCAGTGGAAAAATTGTTCTATCAAGACTGTTTTCCCATTCTCCAAAGGGGATGTGTCAACCAGTTATGATAATGCTGCTGGTTCTGAGAAGAAGGATGGAAAGAGGAAAGCTGAGATGGGTGGTATTCGGGCAGCAATCAAAGAGCAGGTAGATGAGGTTGGGCGAGCTTTGTACTTTGGCAAGTCTCAAGGGAGTTCAGAGCTGAAGACCATCAGCAGTCTAAACTTTCCACTTGTATTAGAGTGTCAGAAGGAAGAATTACCTCGGTTGCCTCCTGTTAAACTTAAATCGGAGGAGAAACCATTGAATATTAGCTGGGAGGAGAAGTTTGAGCATGAGGGACCTGGTTCTAAGATTGCTGGTGTAGATAATGCGTTTCTTATAGGGTCGTATCTGGATGTTCCCATTGGACAAGAAATCAACTCTTCAGGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGGATTAAGTGAATCTATTGACTATCCAAATGAGTATTGGGATTCTGATGAATATGATGACGATGATGATGTTGGATACATGAGACAACCTATTGAAGATGAAACCTGGTTTCTGGCTCATGAAATTGATTACCCAAGTGACAATGAAAAAGGAACAGGGCATGGGAGTGTCCCAGACCCACAGGAAAGAGGTCCAACCAAAGATGAAGACGATGATCAATCTTTTGCAGAGGAGGATTCTTATTTCTCCGGTGAGCAGTATTTTCCAGCAAAACATGTTGCACCGGTTTCAGCTTCAGATGATCCTATAGGGCTGTCGGTGACTGAAATGTATGGGAGGACTGAAGAAAATGATTTAATAGCTCAATATGATGGACAATTAATGGATGAAGAGGAACTGAATTTGATGCGTGCAGAACCTGTATGGCAGGGATTTGTCACTCAGACAAATGAACTTATCATGTTAAGGGATGGGAAGGTTATGAATGATTGTGGGAGGCCAAGGCTGGATGATAATTGTATGGATGATGATCAGCATGGTTCGGTTAGATCAATTGGTGTAGGGATCAACAGTGATGCTGCTGATATTGGCAGTGAAGTACGGGAAAGTTTGGTTGGAGGCAGTAGTGAAGGGGATTTGGAGTATTTTCATGATCAGGATATTGGATCAAGACATTCTCATCAGGAATCTGATAAGAAATATAATGATAGATCAAAGAGGGTGAAAAATCACCCAGATGGAGGATTTTCATTCCCCCCTCCTTTGAGAGATGGGCAGTTGGTACAGGCAAGCTCTAGTAAATCTTTATGGTCAAATAATTGCAATGCTCCTACCAGTGATGAAACTGATGATTGTTTGAATGCTTTGATGAGGAATGCTGACATGCTTGCTTCATGGAGGCGGAAAAGCAGTGATTCTTCACCTGTCAAGAGTTCTAAAGATGAAAATAATGCTAATGCTGTTAGATCAGAGAACTCTTCTCCCTCAACTCTTTCTAATTATGGTTACAATGAAAGAGGACATGTGAAGAAAGAAGAGGATGAAAAAACTGGTGGTGCAAGAGAAGAAGATCCAGGAGTGTCATTGGAAGATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGAACTGGGTTTGAGGAGGACAAAAACTTCCATGTTGTTTTAAATTCAGTCATAGCTGGGCGCTATCATGTTACCGAGTATCTTGGGTCAGCTGCATTCAGCAAGGCTATTCAAGCACACGACCTACATACAGGCATGGATGTTTGTGTGAAAATTATAAAGAACAACAAGGATTTTTTTGATCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAGAACATTTATTAATTGTATGCGAACTTCTCAAGGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCCGGAGGGGAGGTTTACTTCACAATGCCAAGATTGCAGTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATAGCAGATGTGAGGTGAAGGTCATTGACCTTGGAAGTAGTTGTTTTGAAACAGATCATCTCTGCTCATATGTTCAATCTAGGTCTTATCGAGCACCAGAGGTCATTTTGGGGCTTCCATATGACAAAAAGATAGATGTCTGGTCACTTGGTTGTATCTTGGCTGAACTTTGCACTGGCAATGTCCTCTTCCAAAATGATTCACCAGCGACGTTACTTGCACGGGTGATTGGAATAATAGGTTCAATTGACCAAGGCATGCTTGCTAAAGGACGTGATACATATAAATATTTCACCAAAAATCACATGCTCTATGAACGGAATCAGGACACCAACAGACTGGAATACCTCATCCCAAAAAAGACATCCTTGAGGCACCGGTTGCCAATGGGGGACCAAGGCTTCATCGACTTTGTTTCTCATATGCTTGAAATTAACCCAAAAAAGCGCCCTTCTGCTTCTGAGGCTTTGAAGCACCCATGGTTATCATACCCATACGAGCCTATATCATCTTGA 5439 0.4317 MSFNKSPLSRLKRSLSLQSCFPEVRSAEASGCKSPDDNASSVNGGRSFDDIRHNVDTCLDIDDQGISPASSGGKTSTASRRIFPLESRSPCRSVSDIQNSKSELLQAVPEAIGSDAHVALDLSSWPGGSTHPKNETSKSDASPVRQAVDHSFPLASVHYSGAISGEIRSNGLKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYLYSVTEEDNLTKEDRIGLLVAAITANLFVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVVSLRRDRDRERENGEEREETTLIIHRQGKGVGLYTMAADSSSVDVILDFLRRNRFTRAEAALRSELGNRPDLNGFLQKLTLEEKADSGNVAGVEAANGDGSQAQGSGSKELVIVKEIECGERNKPPSGDATNMRSEKNFAFSKGSEDTVLDLYTWKFNADPYRNEGGSSGVSTKNNSNSNSVLELQVYEQSRYRIGELSDAVASKADAKSGEEEIGFSGEKRGSWVGSSSEVTTETNKYDRKELDQKLKSSNSILYSKGNFADNPWSEPMHSSSDQWKNCSIKTVFPFSKGDVSTSYDNAAGSEKKDGKRKAEMGGIRAAIKEQVDEVGRALYFGKSQGSSELKTISSLNFPLVLECQKEELPRLPPVKLKSEEKPLNISWEEKFEHEGPGSKIAGVDNAFLIGSYLDVPIGQEINSSGGKRTAGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDPQERGPTKDEDDDQSFAEEDSYFSGEQYFPAKHVAPVSASDDPIGLSVTEMYGRTEENDLIAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMLRDGKVMNDCGRPRLDDNCMDDDQHGSVRSIGVGINSDAADIGSEVRESLVGGSSEGDLEYFHDQDIGSRHSHQESDKKYNDRSKRVKNHPDGGFSFPPPLRDGQLVQASSSKSLWSNNCNAPTSDETDDCLNALMRNADMLASWRRKSSDSSPVKSSKDENNANAVRSENSSPSTLSNYGYNERGHVKKEEDEKTGGAREEDPGVSLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKFVNKNDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGSIDQGMLAKGRDTYKYFTKNHMLYERNQDTNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHMLEINPKKRPSASEALKHPWLSYPYEPISS* 1813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 33 47 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1296 1327 - -
Vvi1g0147 1812 FunFam Putative serine/threonine-protein kinase dyrk2 1495 1582 - -
Vvi1g0147 1812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1627 1639 IPR008271 GO:0004672|GO:0006468
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1290 1363 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 127 143 - -
Vvi1g0147 1812 Gene3D Phosphorylase Kinase; domain 1 1495 1582 - -
Vvi1g0147 1812 SMART ANK_2a 277 308 IPR002110 GO:0005515
Vvi1g0147 1812 SMART ANK_2a 173 203 IPR002110 GO:0005515
Vvi1g0147 1812 SMART ANK_2a 243 272 IPR002110 GO:0005515
Vvi1g0147 1812 SMART ANK_2a 401 430 IPR002110 GO:0005515
Vvi1g0147 1812 SMART ANK_2a 208 239 IPR002110 GO:0005515
Vvi1g0147 1812 Gene3D - 168 453 IPR036770 -
Vvi1g0147 1812 ProSiteProfiles Ankyrin repeat region circular profile. 277 299 - -
Vvi1g0147 1812 Pfam Domain of unknown function 510 624 IPR026961 -
Vvi1g0147 1812 PANTHER DUAL SPECIFICITY PROTEIN KINASE 1370 1803 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1127 1159 - -
Vvi1g0147 1812 ProSiteProfiles Ankyrin repeat profile. 277 309 IPR002110 GO:0005515
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 845 870 - -
Vvi1g0147 1812 FunFam Ankyrin repeat-containing protein ITN1 isoform C 335 507 - -
Vvi1g0147 1812 SUPERFAMILY Protein kinase-like (PK-like) 1490 1805 IPR011009 -
Vvi1g0147 1812 FunFam Serine/threonine-protein kinase ppk15 1580 1804 - -
Vvi1g0147 1812 Coils Coil 1453 1473 - -
Vvi1g0147 1812 SUPERFAMILY Ankyrin repeat 178 446 IPR036770 -
Vvi1g0147 1812 Pfam Protein kinase domain 1501 1803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 26 47 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 123 143 - -
Vvi1g0147 1812 Gene3D Transferase(Phosphotransferase) domain 1 1555 1803 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1421 1441 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1342 1363 - -
Vvi1g0147 1812 ProSiteProfiles Protein kinase domain profile. 1501 1803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0147 1812 Pfam Ankyrin repeats (3 copies) 178 266 IPR002110 GO:0005515
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1382 1419 - -
Vvi1g0147 1812 MobiDBLite consensus disorder prediction 1382 1449 - -
Vvi1g0147 1812 SMART serkin_6 1501 1803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0147 1812 CDD PKc_DYRK_like 1501 1803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0147 Vvi-Chr1 1386743 1417321 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vvi1g0147 Pkinase 3.2e-50 CL0016