Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0144 ATGGGACGTGGAAAGATCGCGATCAGGAGGATTGAGAACAACACCAATAGGCAAGTCACCTTCTCAAAGCGCCGAGGAGGGCTGTTCAAGAAGGCTCATGAACTTTCTGTGCTTTGTGATGCCCAGATTGGGCTCATCATCTTCTCAAGCACCGGCAAGTTGTCCGAATACTGCAGCCTCCCTTCAAGCATGGAACAAATCATAAGAAGGTACCAAAGAGTCACTGGAACTCATATTTCCAAGCAGGATAATCGGGAACAACTGCATAATGAGATAACAAGGATGAGGAATGAGACACACAACCTTCAACTAAGTCTACAGCGCTACACCGGCGATGACTTGAGCTCTATACAGTTTAAGGACTTGGAAGAACTTGAACAACAGCTTGAACACTCAATTAAGAAGGTTCGAGCCCGAAAGATCCAGGAAAAGCAGCAAGTAGCAGCAATGGAGCAGCAGCAATTGGGAATTGAGTTGAAGCCAGTGGAGGAGCAACAGGTGATGGAGCAGTTCCCATTCAGTGGAGAAGAACAACCCAACAGTGTCCTTCAGCTAGCCACCCTCTCCCCTCATTTCTACCCCTATCGCCTCCAGCCAACCCACCCCAACCTCCAGGACCTCACCCTCCAGTACCCTGGATTTGGCTCCATAGGCACTACTCCCACAAATGATTAG 675 0.4889 MGRGKIAIRRIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCSLPSSMEQIIRRYQRVTGTHISKQDNREQLHNEITRMRNETHNLQLSLQRYTGDDLSSIQFKDLEELEQQLEHSIKKVRARKIQEKQQVAAMEQQQLGIELKPVEEQQVMEQFPFSGEEQPNSVLQLATLSPHFYPYRLQPTHPNLQDLTLQYPGFGSIGTTPTND* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0144 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g0144 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g0144 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g0144 224 Coils Coil 119 153 - -
Vvi1g0144 224 Pfam K-box region 80 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g0144 224 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi1g0144 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g0144 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vvi1g0144 224 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vvi1g0144 224 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Vvi1g0144 224 Coils Coil 78 105 - -
Vvi1g0144 224 ProSiteProfiles K-box domain profile. 85 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g0144 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g0144 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g0144 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0144 Vvi-Chr1 1353272 1355728 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi1g0144 K-box 1.3e-14 No_clan