Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0138 ATGGAGAGAAATCTCGGAAGAGAAATGGAGCAACAGAAAAACTACGAACAAGTTCGATACAACATTGTGGAAGCCAGAAATGAGGGACTTGGGTCTGCAAATCAAAGGTTTCTTCATGATCCATCGAGCACCATTAATACCAATATGAGACCTCCTGATTTCAATATAACAGTTGCAGCTAGGCCTGTGCTGAATTACTCCATTCAGACTGGTGAAGAGTTTGCTCTCGAGTTTATGAATCCCCGGCAACACTTTGTTCCAAGTGCTTCTGGTGATCCTAACAGTGCAACTAACTATGCAGTTCTGAAGGGCTTTCTGGGAGCATCTCATACAGGGTCAGAAAGTGGGCCAGATATCCCAATGCTTACCTCTGTTGAAAAAAGTCGAGTCCAGGAGTTTGAGAGGAAGAGCTCTTCTGTGCACGAAGATAAAGGTTACTATGATTCTGTAAGATCAGTGCCTCGAATCTCATCTAGAAATGACAGTAGTCGGGGACTTCATGGCTATACCTCTTCAGGAGCATCTGAGAGATCATCGACAAAGTTCAAGTTCCTCTGCAGTTTTGGTGGTAAAATCCTCCCCCGTCCAAGTGATGGAAAGCTTAGGTATGTAGGAGGTGAAACACGTATTATTCGCATGAACAAGGACATATCTTGGCAGGATCTTATGCAGAAAACTATGACAATTTATAATCAATCTCATACGATCAAATATCAGCTTCCTGGTGAGGACCTTGATGCATTGGTTTCTGTATCTTGTGATGAGGATCTGCAAAACATGATGGAGGAGTGTAATGTACTAGAAGATGGGGGATCGCAGAAACTTAGGCTTTTTCTGTTTTCTAGTAGTGATTTTGATGATGGTCAGTTTGGCTTGGGAAGCATGGAGGGTGACTCTGAGATTCAATATGTGGTTGCTGTGAATGGAATGGACCTAGAATCAAGAAAGAACTCAATTGGGTTGGCAAGCACTTCAGATAACAATTTGGATGAGTTACTCAATCTAAATGTTGAAAGGGAGACTGGTCGAGTTGCAACAGAATTACCTGGACCTAGTACTGCACCTTCGACTGTCAATGTACATTCATCAGCAGTCCAATCTTCTCAACCACTGGTGCCGAATTTTTCTGGTGCTTATGAATCCAATTCAAAGCCTTACCAAGGTCAGAAAATGCGTCACGGAGAAGCTGAACAACATCAGGTGTTTCCTGTTCACCACTTGGAGAGTGTCCATGATTTAGATGGCCGGAATTCTGTTCCTTTTTCTGTTCAATTTCCATATGGTTATGGTTCTCAACCATTTAACTATGGACCATTTGGAGAAAATCTGGTTCATATGCCTCTCCATGGGCATGTGACTCGACAGGGAGGTCCGGCTGAAGATCAGATGTACAGTGATGTCCATGTTCATGTGCAGGGTCTGGAGGTGTCAGCAAAGGAGGATAAATTGAAGAGAGATAACTCATCCCAGAAAATGAATGAACCTGAAAAGAATAGGTCACTAGAAAAGGAAGCGTCTGTGAAGGAGGCAAAAATAAAAACTGATAGCTCAGTCCAAAAAATGAACGAGCTGGAAAAGATCCGGTCTTTAGAAAGTGAGCACAATGTTTCTTCACATCCACATGATGGTTCCGTTCCAAATTATATTCCTAGGGACGAAGCATCAGTTGTCAATTCTACTGCAGACATAGGAGTGCCCATGTTGCTTCCAAAAACAAGTAAAAAACACCTAGAATCTGTACAGATCTCAAAGCCCCCTGAAGCTGTAAGTGATGGGAAAATAAATACATTCAATGGAGATGGCCATTTTCATACCTCTGGTGGAGCATTTTCTCCCGGATATGGTGACTCTGAGGCTGATCCAACTGAAGTTAGCTACCCTGAACAAACACTGATTCCTCCACGGGTTTTTCATTCTGAACGTATTCCCAGGGAGCAGGCAGAATTGAACCGCTTGTCAAAGTCTGATGATTCCTTTGGTTCTCAGTTTCTGATGAGTCACACACGATCTGATGTTTCACAACAGGTTGCAGAATCAATTGATAAACTGCATGGTGGGAATGTGACTTCCCAGAGTGAGCAGGCCGCCTCATCTACAACAGCACTGTATACAAATCCTAAAACTGTTGAGGATGGACTGACACAATTTGAAAAGTATAAAGATGTTGCTGATGATATTAAAAAATTGAATTCCAATATTTCTGAAGATGGGTTGGGGCCAAAGTTATTGAAATCTGAATCAAAATGGCCAGCACCAACTTCCGTGGATGATCATGAAATAGCCGGGGTTAGGGATGGTAATAAAGACCCTGCTGTCAGTGATAGAGAAGCAGCTGGGTTGAATAATTTAACAGCAAGTCAAGGAACTTCAAGCAAACCCCATGATGACTCTCCTTCTAAGCCAACAGGATTTCATTGGGATGAGATGGCTGTCAAGAAAAACAATGACGATAACACTAAAGGGCATGCACAGCCTATGGCTTGGACAGAGAACCCACTCAGATCTGTTCCTGGAGGAGAATCCTCCGTTGGCGTTGGTGCTCCAGAGGGGGGAGACATCCTTATTGATATCAATGACCGCTTCCCTCGTGACTTCCTCTCTGATATATTCTCCAAGGCAAGAACCTCTGAGGGCCCCCCTGGAATCAGTCCACTGCATGGTGATGGAACTGGCTTGAGCTTGAATTTGGAGAATCATGAACCTAAGCATTGGTCATTCTTTCAAAAGTTGGCTCAAGAGGAGTTTATTAGGAAAGGTGTTTCCCTTATGGACCAGGATCATCTTGGGTATCCATCCTCACTTATGAATATTGAGGAAGGGACTCCTATAGATTACAGTTTTCCTCCTTTGAAGAGTGATGGAGTTGCCTTGGGTCCTATGGATTCCCGTATCAATTTTGAGGAGGAAATTCAGCAAGAGTCTTCCAGCATGGTTAGACCTAACACCATTGATATGCATGAAGATTATGACCCTTCTCCGGTCAAGAGAGATGAAAGCGTGCAGATGGATGGAATGGCTAACCCAAGAACGCCAGATTCGGATTATGAGGAGGTAAAATTCGAAATTCAGAACACAGGCGCACCTTTTGTTGATCCCTCTTTGGGAGATATCGATATTAGCACCTTGCAGATCATAAAGAATGAAGATCTTGAAGAGTTGAGGGAATTGGGTTCTGGCACATTTGGGACTGTTTATCATGGAAAATGGAGGGGAACAGACGTTGCTATTAAAAGAATAAAGAAGAGCTGTTTCACTGGTCGTTCATCTGAGCAAGAAAGATTGACTGTGGAGTTTTGGCGTGAAGCTGACATTCTGTCAAAGCTTCACCATCCCAATGTGGTGGCATTTTATGGCGTGGTGCAGGATGGACCAGGGGGAACACTAGCCACTGTGACAGAATTTATGGTTAATGGTTCGCTTAGGCATGTTTTGGTTTCCAAGGACAGGCATCTTGATCGTCGTAAGCGGCTCATTATTGCAATGGATGCGGCATTTGGAATGGAATACTTGCATTCAAAGAATATTGTGCATTTTGATCTGAAATGCGATAACTTGCTTGTGAACTTGAAAGATCCTCTACGACCCATTTGCAAGGTTGGTGACTTTGGCTTGTCAAAAATTAAACGAAATACCTTGGTTACTGGTGGTGTGCGGGGAACCCTTCCATGGATGGCACCAGAATTATTGAATGGTAGCAGTAGTAGGGTTTCTGAAAAGGTTGATGTTTTCTCCTTTGGTATTGTCCTATGGGAGATCCTCACTGGTGAGGAGCCTTATGCCCATATGCATTATGGAGCAATCATAGGAGGCATTGTGAACAACACATTGAGACCACCTGTCCCAAGCTACTGTGATTCTGAGTGGAAATTGCTAATGGAGCAGTGTTGGGCCCCAGATCCCATTGGCCGCCCATCATTCACTGAAATTGCTAGACGATTACGGGCGATGTCTGCAGCATGCCAAACAAAACCCCAGGGTTATTCAGCAGGACCAGCACACAACCCAGTCACCAAGTAA 4017 0.4369 MERNLGREMEQQKNYEQVRYNIVEARNEGLGSANQRFLHDPSSTINTNMRPPDFNITVAARPVLNYSIQTGEEFALEFMNPRQHFVPSASGDPNSATNYAVLKGFLGASHTGSESGPDIPMLTSVEKSRVQEFERKSSSVHEDKGYYDSVRSVPRISSRNDSSRGLHGYTSSGASERSSTKFKFLCSFGGKILPRPSDGKLRYVGGETRIIRMNKDISWQDLMQKTMTIYNQSHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVLEDGGSQKLRLFLFSSSDFDDGQFGLGSMEGDSEIQYVVAVNGMDLESRKNSIGLASTSDNNLDELLNLNVERETGRVATELPGPSTAPSTVNVHSSAVQSSQPLVPNFSGAYESNSKPYQGQKMRHGEAEQHQVFPVHHLESVHDLDGRNSVPFSVQFPYGYGSQPFNYGPFGENLVHMPLHGHVTRQGGPAEDQMYSDVHVHVQGLEVSAKEDKLKRDNSSQKMNEPEKNRSLEKEASVKEAKIKTDSSVQKMNELEKIRSLESEHNVSSHPHDGSVPNYIPRDEASVVNSTADIGVPMLLPKTSKKHLESVQISKPPEAVSDGKINTFNGDGHFHTSGGAFSPGYGDSEADPTEVSYPEQTLIPPRVFHSERIPREQAELNRLSKSDDSFGSQFLMSHTRSDVSQQVAESIDKLHGGNVTSQSEQAASSTTALYTNPKTVEDGLTQFEKYKDVADDIKKLNSNISEDGLGPKLLKSESKWPAPTSVDDHEIAGVRDGNKDPAVSDREAAGLNNLTASQGTSSKPHDDSPSKPTGFHWDEMAVKKNNDDNTKGHAQPMAWTENPLRSVPGGESSVGVGAPEGGDILIDINDRFPRDFLSDIFSKARTSEGPPGISPLHGDGTGLSLNLENHEPKHWSFFQKLAQEEFIRKGVSLMDQDHLGYPSSLMNIEEGTPIDYSFPPLKSDGVALGPMDSRINFEEEIQQESSSMVRPNTIDMHEDYDPSPVKRDESVQMDGMANPRTPDSDYEEVKFEIQNTGAPFVDPSLGDIDISTLQIIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLVSKDRHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSSRVSEKVDVFSFGIVLWEILTGEEPYAHMHYGAIIGGIVNNTLRPPVPSYCDSEWKLLMEQCWAPDPIGRPSFTEIARRLRAMSAACQTKPQGYSAGPAHNPVTK* 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0138 1338 SMART PB1_new 196 282 IPR000270 GO:0005515
Vvi1g0138 1338 ProSitePatterns Protein kinases ATP-binding region signature. 1056 1081 IPR017441 GO:0005524
Vvi1g0138 1338 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1043 1137 - -
Vvi1g0138 1338 CDD STKc_MAP3K-like 1056 1313 - -
Vvi1g0138 1338 CDD PB1_UP2 185 280 - -
Vvi1g0138 1338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1175 1187 IPR008271 GO:0004672|GO:0006468
Vvi1g0138 1338 PANTHER SERINE-THREONINE PROTEIN KINASE 233 1315 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 731 847 - -
Vvi1g0138 1338 ProSiteProfiles Protein kinase domain profile. 1050 1316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0138 1338 Gene3D Transferase(Phosphotransferase) domain 1 1138 1330 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 153 175 - -
Vvi1g0138 1338 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1138 1329 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 982 1012 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 983 997 - -
Vvi1g0138 1338 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 201 282 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 475 516 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 151 175 - -
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 758 772 - -
Vvi1g0138 1338 PRINTS Tyrosine kinase catalytic domain signature 1240 1262 IPR001245 GO:0004672|GO:0006468
Vvi1g0138 1338 PRINTS Tyrosine kinase catalytic domain signature 1169 1187 IPR001245 GO:0004672|GO:0006468
Vvi1g0138 1338 PRINTS Tyrosine kinase catalytic domain signature 1132 1145 IPR001245 GO:0004672|GO:0006468
Vvi1g0138 1338 PRINTS Tyrosine kinase catalytic domain signature 1284 1306 IPR001245 GO:0004672|GO:0006468
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 779 797 - -
Vvi1g0138 1338 SMART serkin_6 1050 1319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0138 1338 Gene3D - 200 282 - -
Vvi1g0138 1338 Pfam PB1 domain 198 281 IPR000270 GO:0005515
Vvi1g0138 1338 SUPERFAMILY Protein kinase-like (PK-like) 1041 1312 IPR011009 -
Vvi1g0138 1338 SUPERFAMILY CAD & PB1 domains 197 287 - -
Vvi1g0138 1338 Pfam Protein tyrosine and serine/threonine kinase 1051 1313 IPR001245 GO:0004672|GO:0006468
Vvi1g0138 1338 MobiDBLite consensus disorder prediction 798 819 - -
Vvi1g0138 1338 Gene3D Phosphorylase Kinase; domain 1 1043 1137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0138 Vvi-Chr1 1305065 1315182 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vvi1g0138 PK_Tyr_Ser-Thr 6.3e-62 CL0016