Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0135 ATGGGAATAGATCTTGAACAGCCATCAGGAGAACATCAAAAGATAGACAATAGACCAAATGTGAATATTAATATGGTGGATGCTGGAGAAGAAGTGCAAGGTAGAAATGAAGTAACCATGAATCCTCCTAAGGGAAACAATAAAGAAAATACAGGCCCAAATGTGAGTCGAAGGGTATTGGATGGTAGACAGAAAGCACATGCTGGAGATGGAGTGGATGCGAATTTTTCTAAAAATTTAGAACCCCATGATGGCATGGAATTTGATTCGAAGGAGGAAGCTTTTTCATTCTATAAAGAATATGCCAAGTCTGTGGGATTTGCCACCATAATAAAAGCCAGCCGTCGATCAAGAATATCTGGGAAATTCATTGATGCAAAATTTGTATGTACTAGATATGGAAATAAGCGAGAATCTAGTACAGCTGAAACAACACAACCCATTTCAAGTACAGATGGTACCACAAGTATTCCGGTCAAGAGAAAACGAGGTAGAATTAATCGGTCTTGGTCAAAAACAGATTGCAAGGCTTGTATGCATGTTAAGAGAAGGCAAGATGGAAGATGGATTATACGCAGTTTCATAAAGGAGCATAACCATGAAATTTTTCCAGACCAAGCCTATTATTTTCGAGGTCATAGGAATATAAATCTAGGCAATACTAATGTCGATGCCTTGCATGCTATCCGGGCTAGGACAAAAAAGATGTATGTAACAATGTCCAGACAGGCTGGTGGGTATAAGAAAGTTGAGAATCAAAAGGGCAGCACCATAAATCAATTTGATAGTGGACAGCATTTGGCTTTAGAGGAGGGAGATGCACAAGTAATGCTCGACCATTTCATGTATATGCAAGATGAGAATCCTAACTTTTTCTATGCAATAGATTTGAATGAAGATCAACGTTTGAGAAATGTTTTTTGGGTTGATGCCAGAGGTAGGCTTGATTATGGAAATTTCAGTGATGTAGTTTTCTTCGATACTACATATATCAAGAACGAATATAAATTGCCTTTTGCACCTTTTATCGGGGTGAACCATCACTTTCAGTTCGTGTTGCTCGGATGTGCTTTAATTGCAGATGAGACTAAATCAACACTTGTTTGGTTGATGCGGTCATGGCTTCGAGCAATGGGTGGACAGGCTCCAAGAGTGATACTTACTGACCAAGACAAAGCCTTGAAAGAAGCTATTGCAGAGGTCTTTCCAGAATCTCGTCACTGTTTTTGCTTGTGGCATATATTAAGCAAGATTCCTGAAAAGCTCAGTTGTGTGGTGAGGCAACATGAAACTTTTATGAGCAAATTTAACAAGTGTGTTTTTAAGTCTTGGACAGATGAGCAGTTTGAAAAGAGATGGCGGAAAATGGTTGACAGATTTGACCTAAGAAATGACATATGGTTTCAATCATTGTATGAAGATCGTGAGCAATGGGTGCCTACATTCATGCAAGACTTGTTTTTGGCTGGAATGTCTACAACTCAACGGTCGGAAAGTGTAAACTGTTTCTTCGACAAGTACGTACAAAGAAAAACTACATTGAAGGAGTTTGTGGAAAACTACAAAACAATTCTACAGGAGAAGTATGAAGAGGAAGCAAAAGCAGATTTTGAGACTTGGCATAAACAACCAGGATTGAAATCTCCTTCACCATTCGGAAAACAAATGGCAACATTGTACACACATGCAATATTCAAGAAATTCCAAGTTGAGGTTTTGGGAGTAGTTGCTTGTCATCCCAAAAAAGAAAGTGAAGATGGAGCAACCATTACATTTAGGGTTCAAGATTTTGAAGAGAATCAAGATTTCATTGTGTTGTGGAATGAAACAAAGTCAGATATTTCTTGTTTATGCCGTTCATTTGAATACAATGGTTTTCTTTGTAGACATGTGATGATTGTTCTGCAAATGTCTGGGGTGCATAACATCCCATCTCACTATATATTGAAACGTTGGACGAAGGATGCAAAGAGTAGACAAACCACAAGACAAGGGTCAGATGCGGTTGAGTCTAGGGTGCAACGATACAATGATCTATGCCGACGGGCTTTTAAATTGGGTGATGAAGGGTCTTTATCCCAAGAGACTTACAAAATTGCATTCAATGCACTGGAAGAAGCCTTGAGAAAGTGCGAGAGTATAAATAACTCAATTCAGAGTGCAGTGGAGCCAAACTCACTGCTCACTCATGGTTTTCATGACTTTGAAGAGGTGAACCAAGGTAATGGTTCAGCCAAAGCTAACAAAAAGAACAGTATGTCCAAAAAAAGAAAGGCAAATCCAGAGCAAGAGATAATAACCATTGGCATGCAGGACAGCTGGCAGCAAATGGAACAACTAAACTCAAGAGCTTCAACTCTTGATGGCTATTTTGGCACTCAACAAATTATGCAAGGAATGGGACAATTAAACTCAATGGCTGCAACACGTGATGATTATTATAGCCAACAGAGCATGCAGGGACTGGGACAATTGAACTCAATTGCACCTATGCATGATGCTCACTACGTTTCTCAACAAAGGCTGCATGGGCTGGGGCAGTTACATTTCAGACCACAAACTATACAGAGTTGTTTTGACATCCAGGACAGTTTGCAAGACATGGACCAGTCCAATATGGGACCTGTGCAGATGCATGGCATGGCATCAAAACATTTGCATGCGAAACACCTAACTCGTTAG 2682 0.3971 MGIDLEQPSGEHQKIDNRPNVNINMVDAGEEVQGRNEVTMNPPKGNNKENTGPNVSRRVLDGRQKAHAGDGVDANFSKNLEPHDGMEFDSKEEAFSFYKEYAKSVGFATIIKASRRSRISGKFIDAKFVCTRYGNKRESSTAETTQPISSTDGTTSIPVKRKRGRINRSWSKTDCKACMHVKRRQDGRWIIRSFIKEHNHEIFPDQAYYFRGHRNINLGNTNVDALHAIRARTKKMYVTMSRQAGGYKKVENQKGSTINQFDSGQHLALEEGDAQVMLDHFMYMQDENPNFFYAIDLNEDQRLRNVFWVDARGRLDYGNFSDVVFFDTTYIKNEYKLPFAPFIGVNHHFQFVLLGCALIADETKSTLVWLMRSWLRAMGGQAPRVILTDQDKALKEAIAEVFPESRHCFCLWHILSKIPEKLSCVVRQHETFMSKFNKCVFKSWTDEQFEKRWRKMVDRFDLRNDIWFQSLYEDREQWVPTFMQDLFLAGMSTTQRSESVNCFFDKYVQRKTTLKEFVENYKTILQEKYEEEAKADFETWHKQPGLKSPSPFGKQMATLYTHAIFKKFQVEVLGVVACHPKKESEDGATITFRVQDFEENQDFIVLWNETKSDISCLCRSFEYNGFLCRHVMIVLQMSGVHNIPSHYILKRWTKDAKSRQTTRQGSDAVESRVQRYNDLCRRAFKLGDEGSLSQETYKIAFNALEEALRKCESINNSIQSAVEPNSLLTHGFHDFEEVNQGNGSAKANKKNSMSKKRKANPEQEIITIGMQDSWQQMEQLNSRASTLDGYFGTQQIMQGMGQLNSMAATRDDYYSQQSMQGLGQLNSIAPMHDAHYVSQQRLHGLGQLHFRPQTIQSCFDIQDSLQDMDQSNMGPVQMHGMASKHLHAKHLTR* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0135 893 MobiDBLite consensus disorder prediction 39 54 - -
Vvi1g0135 893 MobiDBLite consensus disorder prediction 135 157 - -
Vvi1g0135 893 Pfam FAR1 DNA-binding domain 96 204 IPR004330 -
Vvi1g0135 893 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g0135 893 ProSiteProfiles Zinc finger SWIM-type profile. 603 639 IPR007527 GO:0008270
Vvi1g0135 893 MobiDBLite consensus disorder prediction 739 760 - -
Vvi1g0135 893 SMART 26again6 614 641 IPR006564 GO:0008270
Vvi1g0135 893 MobiDBLite consensus disorder prediction 31 56 - -
Vvi1g0135 893 Pfam MULE transposase domain 323 416 IPR018289 -
Vvi1g0135 893 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 76 713 IPR031052 GO:0006355
Vvi1g0135 893 Pfam SWIM zinc finger 611 637 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0135 Vvi-Chr1 1257420 1261050 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi1g0135 FAR1 1.1e-28 CL0274