Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0129 ATGGTGAGAGAATCATCGTCTGGCGGAGGGGGAGGAGGCGGCGGAGGTGGAGTTGCAGGTGGTGGTGGTGGAGATATGGTAATGAAGCCTGCATGGCTGGATGGTCTAATGGCCGAGACATTCTTTGCTGGTTGTGGGGTCCACGAGAATCGTAGGAAGAACGAGAAGAACGTTTTTTGCTTGGAGTGTTGTCAAAGCATCTGCCCTCACTGTCTTCCTTCTCATCGCTCTCATCCTCTCCTCCAGGTGAGGAGATATGTGTACCATGATGTGGTCAGATTGGATGACCTTGAGAAGCTCATTAACTGTTCTTATATTCAGCCTTATACTATAAACAGTGCCAAAGTTATATTCTTGAACCAGAGGCCACAGTCCAGGTCTTGTAAAGGCTCTGCCAATATTTGCTTCACTTGTGACAGGATTCTCCAGGAGCCATTCCGCTTCTGTTCCATTTCATGCAAGGTTGATTATATGGTGTACCAAGGGGAAGATTTGTCGAGCATTATATACAGGTTTGACGAATCCGATTTCGCCTACTCCCAATTCGAAGGCCTACGAATGGAGGACGAGGAGGGCCAAATTACCCCGAACTCCATCCTGGAGGACCCGTTACAGTTCAAGGCCTCGTCCTGCTCCTCCAACGAGACCTCGGGCAATTCAGGAATTTCACGAGATCCCGAGGCGGTGGTGAGGAAGAAGAAGAAATCAACCGGTTTTCTCCCCGGCAATTTTCTCTCCTTGAGCAGCAGAAGAAAGGGTGCTCCTCATAGGTCTCCTCTTTCTTAG 786 0.4936 MVRESSSGGGGGGGGGGVAGGGGGDMVMKPAWLDGLMAETFFAGCGVHENRRKNEKNVFCLECCQSICPHCLPSHRSHPLLQVRRYVYHDVVRLDDLEKLINCSYIQPYTINSAKVIFLNQRPQSRSCKGSANICFTCDRILQEPFRFCSISCKVDYMVYQGEDLSSIIYRFDESDFAYSQFEGLRMEDEEGQITPNSILEDPLQFKASSCSSNETSGNSGISRDPEAVVRKKKKSTGFLPGNFLSLSSRRKGAPHRSPLS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0129 261 Pfam PLATZ transcription factor 84 155 IPR006734 -
Vvi1g0129 261 ProSiteProfiles Zinc finger B-box type profile. 45 94 IPR000315 GO:0008270
Vvi1g0129 261 CDD Bbox2 45 83 - -
Vvi1g0129 261 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 27 260 - -
Vvi1g0129 261 MobiDBLite consensus disorder prediction 209 223 - -
Vvi1g0129 261 MobiDBLite consensus disorder prediction 209 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0129 Vvi-Chr1 1219825 1221412 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vvi1g0129 PLATZ 7e-28 No_clan