Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0124 ATGGCGCCGAGTTTCGGAGGCCTCCAGCTCACGCCGTTTTCATCCGGCGGCAGGAAGACGTTGCCTGACGACGATGCCGGCGACCTAGAGGACGTGCGGCTCCTCGATGCTTACAAGGAGGACGACTCTGGGTTGGAGGAAGGTATGAGGGGGATTCAGGTGAGAGTCACGGGGATGACCTGCGCTGCTTGCTCCAATTCCGTGGAGGGAGCTCTCCGGGACGTCAATGGTGTCCTGAGGGCCTCCGTGGCGCTGCTTCAGAACAGGGCTGACGTGGTTTTTGACCCCAAATTGGTTGGGGAAGAGGATATAAAAAATGCTATTGAAGATGCTGGGTTTGATGCAGAGATTATGAGTGAACCCAGTCGAACGAAGCCACATGGGACCCTGCTGGGGCAGTTCACGATAGGAGGTATGACATGTGCTGTGTGTGTGAACTCCGTTGAAGGAATCTTGAGAAAGCTTCCTGGTGTCAAGAGGGCTGTAGTTGCCTTGGCAACTTCATTAGGTGAAGTTGAGTATGATCCTACAATTATTAGTAAAGATGATATAGTCAATGCCATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATCATACTAGGGGTTACTGGGATATCTAATGAGATGGATGCACTGATTTTAGAAGGCATACTCACCAGCATAAGAGGTGTGAGACAATTTCTATTCGACCGGACGTTAGGAGAACTTGAAGTTCTCTTTGATCCTGAAGTTATCAGTTCTAGATCCTTAGTTGATGGAATTGAGGGTGGAAGCAATGCTAAGTTTAAATTACATGTCAAGAACCCTTATACGAGAATGACTTCTAAAGATCTAGAAGAATCCTCAAACATGTTTCGGCTCTTCACCTCTAGTTTGTTTCTCAGTATTCCTGTCTTTCTCATACGAGTTGTTTGCCCTCATATACCTCTGGTGGATTCATTATTGCTCTTGCGATGTGGACCCTTTCTAATGGGTGATTGGTTGAAATGGGCATTAGTCAGTCTTGTTCAATTTGTCATTGGGAAGCGTTTCTATATTGCTGCCGGTAGAGCACTTCGAAATGGTTCAGCGAACATGGATGTTTTGGTTGCATTGGGAACTTCAGCCTCATACTTTTACTCTGTTTGTGCACTTCTGTATGGTGCAGTCACTGGGTTTTGGTCTCCAACTTACTTCGAAGCAAGTGCCATGCTAATAACATTTGTATTATTGGGGAAATATTTGGAAAGTCTTGCTAAGGGGAAGACATCAGATGCGATCAAGAAGTTAGTAGAACTTGCACCAGCAACGGCTCTGTTGCTTGTCAAAGATAAAGGTGGAAGGTTCATTGAAGAACAAGAAATAGATGCTATGCTAATTCAGCCTGGTGACGTATTGAAAGTTCTTCCTGGTACAAAGGTTCCTGCTGATGGTATTGTCATGTGGGGTTCAAGTTATGTCAATGAGAGTATGGTAACAGGTGAATCTGCACCTGTTTCGAAGGAAGTCAATTCACCAGTTATTGGAGGTACAATGAATTTATATGGTGCCCTTCACATACAAGCCACCAAAGTAGGATCTAACGCAGTTTTGAGCCAGATAATTAGTTTGGTTGAGACAGCTCAGATGTCCAAAGCTCCTATTCAGAAGTTTGCTGACTTTGTTGCCAGTATTTTTGTTCCAACAGTTGTTGCTATGTCGTTGCTGACACTATTGGGCTGGTATGTTTCTGGCACTCTTGGTGCTTACCCAAAGCAATGGCTGCCAGAAAATGGAAATTATTTTGTTTTTGCACTTATGTTTGCAATATCAGTTGTGGTGATTGCATGCCCCTGTGCCTTGGGCCTGGCAACACCAACTGCTGTCATGGTTGCAACAGGGGTTGGGGCTAATAATGGTGTGCTGATAAAAGGAGGAGATGCTTTGGAAAGGGCTCAGAAGGTTAAGTATGTGGTATTTGATAAAACAGGCACCCTAACTCAGGGAAAAGCTACAGTTACAACTGCAAAAGTTTTCACAGGAATGGATCATGGAGAATTTCTTACTTTGGTAGCTTCTGCAGAGGCTAGTAGTGAACACCCACTGGCTGTAGCCATAGTGGAATATGCTCGCCATTTCCATTTCTTTGAGGAGCCTTCTACAACCAAGGATGCTCAAGACCACAGCAGAGAGACTAGATTCTCTGGATGGCTTCTGGATGTCTCAGAGTTTTCTGCTTTGCCTGGAAGAGGTGTCCAGTGCTTTATAAAAGGAAAACGAGTCCTGGTTGGTAATCGAAAGTTGCTGACTGAAAGTGGGGTCACAATCCCAACTGATGTAGAAAATTTTCTTGTAAATTTGGAAGAAAGTGCAAAAACAGGTGTACTTGTTGCATATGATGATACCGCAGTTGGTGTTTTGGGGGTTGCAGATCCACTAAAGCGAGAAGCTGCTGTGGTTGTGGAAGGCCTTTTAAAAATGGGTGTCATACCAGTCATGGTTACGGGGGACAATTGGAGGACCGCTCGGGCTGTTGCTAAGGAGGTTGGCATTCAAGATGTAAGGGCAGAGGTAATGCCAGCAGGAAAAGCTGAAGTCATCCATTCCTTTCAGAAAGATGGAAGCATAGTTGCAATGGTGGGCGATGGTATTAACGACTCTCCTGCCCTGGCTGCTGCAGATGTTGGTATGGCAATAGGAGCAGGGACTGATATCGCCATAGAAGCTGCAGACTATGTGCTGATGAGGAGTAACTTAGAAGATGTAATCACAGCCATTGACCTCTCGAGGAAGACCTTCTCCCGCATCCGGTTGAACTATGTCTTTGCCATGGCCTACAATGTGATCGCGATTCCCATTGCTGCTGGGGTCTTCTTCCCTTGGCTAGGTATAAAGTTGCCACCATGGGCTGCTGGCGCATGCATGGCTCTCTCATCTGTAAGTGTTGTGTGCTCTTCTTTGCTTCTAAGGAGATACAAAAAACCAAGGCTTACAACTATACTAGAAATAACTGTAGAGTAG 3003 0.4542 MAPSFGGLQLTPFSSGGRKTLPDDDAGDLEDVRLLDAYKEDDSGLEEGMRGIQVRVTGMTCAACSNSVEGALRDVNGVLRASVALLQNRADVVFDPKLVGEEDIKNAIEDAGFDAEIMSEPSRTKPHGTLLGQFTIGGMTCAVCVNSVEGILRKLPGVKRAVVALATSLGEVEYDPTIISKDDIVNAIEDAGFEASFVQSSEQDKIILGVTGISNEMDALILEGILTSIRGVRQFLFDRTLGELEVLFDPEVISSRSLVDGIEGGSNAKFKLHVKNPYTRMTSKDLEESSNMFRLFTSSLFLSIPVFLIRVVCPHIPLVDSLLLLRCGPFLMGDWLKWALVSLVQFVIGKRFYIAAGRALRNGSANMDVLVALGTSASYFYSVCALLYGAVTGFWSPTYFEASAMLITFVLLGKYLESLAKGKTSDAIKKLVELAPATALLLVKDKGGRFIEEQEIDAMLIQPGDVLKVLPGTKVPADGIVMWGSSYVNESMVTGESAPVSKEVNSPVIGGTMNLYGALHIQATKVGSNAVLSQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMSLLTLLGWYVSGTLGAYPKQWLPENGNYFVFALMFAISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKVKYVVFDKTGTLTQGKATVTTAKVFTGMDHGEFLTLVASAEASSEHPLAVAIVEYARHFHFFEEPSTTKDAQDHSRETRFSGWLLDVSEFSALPGRGVQCFIKGKRVLVGNRKLLTESGVTIPTDVENFLVNLEESAKTGVLVAYDDTAVGVLGVADPLKREAAVVVEGLLKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKAEVIHSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRSNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVIAIPIAAGVFFPWLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTILEITVE* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0124 1000 FunFam Copper-exporting P-type ATPase A 130 198 - -
Vvi1g0124 1000 Gene3D - 49 120 - -
Vvi1g0124 1000 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Vvi1g0124 1000 CDD P-type_ATPase_Cu-like 294 970 - -
Vvi1g0124 1000 CDD HMA 133 196 IPR006121 GO:0046872
Vvi1g0124 1000 FunFam Copper-exporting P-type ATPase A 48 118 - -
Vvi1g0124 1000 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 43 996 - -
Vvi1g0124 1000 Gene3D - 421 543 - -
Vvi1g0124 1000 FunFam Copper-exporting P-type ATPase 754 805 - -
Vvi1g0124 1000 FunFam Copper-transporting ATPase RAN1 660 753 - -
Vvi1g0124 1000 FunFam Copper-transporting ATPase 1, putative 421 543 - -
Vvi1g0124 1000 SFLD Haloacid Dehalogenase 635 926 - -
Vvi1g0124 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 655 661 IPR018303 -
Vvi1g0124 1000 ProSitePatterns Heavy-metal-associated domain. 56 86 IPR017969 GO:0046872
Vvi1g0124 1000 NCBIfam HAD-IC family P-type ATPase 733 953 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0124 1000 NCBIfam HAD-IC family P-type ATPase 406 705 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0124 1000 FunFam Probable copper-transporting ATPase HMA5 772 931 - -
Vvi1g0124 1000 Gene3D - 620 931 IPR023214 -
Vvi1g0124 1000 Pfam Heavy-metal-associated domain 54 114 IPR006121 GO:0046872
Vvi1g0124 1000 Pfam Heavy-metal-associated domain 134 194 IPR006121 GO:0046872
Vvi1g0124 1000 SUPERFAMILY HMA, heavy metal-associated domain 131 201 IPR036163 GO:0046872
Vvi1g0124 1000 Gene3D - 132 197 - -
Vvi1g0124 1000 ProSiteProfiles Heavy-metal-associated domain profile. 50 116 IPR006121 GO:0046872
Vvi1g0124 1000 SUPERFAMILY HMA, heavy metal-associated domain 47 121 IPR036163 GO:0046872
Vvi1g0124 1000 CDD HMA 53 116 IPR006121 GO:0046872
Vvi1g0124 1000 PRINTS H+-transporting ATPase (proton pump) signature 846 862 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0124 1000 PRINTS H+-transporting ATPase (proton pump) signature 905 930 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0124 1000 PRINTS H+-transporting ATPase (proton pump) signature 874 890 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi1g0124 1000 PRINTS P-type cation-transporting ATPase superfamily signature 874 893 - -
Vvi1g0124 1000 PRINTS P-type cation-transporting ATPase superfamily signature 799 810 - -
Vvi1g0124 1000 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Vvi1g0124 1000 PRINTS P-type cation-transporting ATPase superfamily signature 897 909 - -
Vvi1g0124 1000 PRINTS P-type cation-transporting ATPase superfamily signature 653 667 - -
Vvi1g0124 1000 PRINTS P-type cation-transporting ATPase superfamily signature 821 831 - -
Vvi1g0124 1000 SUPERFAMILY Calcium ATPase, transmembrane domain M 393 963 IPR023298 -
Vvi1g0124 1000 Pfam haloacid dehalogenase-like hydrolase 649 888 - -
Vvi1g0124 1000 NCBIfam copper ion binding protein 53 115 IPR006122 GO:0005507
Vvi1g0124 1000 NCBIfam copper ion binding protein 133 195 IPR006122 GO:0005507
Vvi1g0124 1000 SUPERFAMILY Calcium ATPase, transduction domain A 453 539 IPR008250 -
Vvi1g0124 1000 SFLD p-type atpase 635 926 IPR044492 -
Vvi1g0124 1000 NCBIfam heavy metal translocating P-type ATPase 367 983 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vvi1g0124 1000 SUPERFAMILY HAD-like 652 980 IPR036412 -
Vvi1g0124 1000 Gene3D - 660 753 IPR023299 GO:0000166
Vvi1g0124 1000 Gene3D - 754 805 IPR023299 GO:0000166
Vvi1g0124 1000 Pfam E1-E2 ATPase 435 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0124 Vvi-Chr1 1169800 1177341 Transposed