Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0121 ATGTCATGGCATCAACACTGTGTTTCAGTCCACAGCAACCCATCTCTCACAATCTCTTGGAACAAGAAAGCTTTCAATCTTAGAGCATCTCTTTTCGATCATCCTCTTGCAAGCAGGATCATGGTTACAAATTTATCATATGCTACCAGCAAAAGTAGTCTGCAGGAGGAGTTCTCAAAATTCGGCCAGATAGTTGAAGTTGACGTTGTCAAAGACAAAGCTGCAAAGAGGCCAAGAGGCTACGCATTCATCCAATATACCTCTCAAGATCATGCCATGCTTGCCCTAGAAAATATGGATCACAAGTATTTGGATGGCAGGGTGGTCTGCGTGGAACTCGCAAAACCTGGGAAAAATGATTTTGGTAGATACCCTAGAACCTGCGGACCACCCAGCAAGAAGGAAGACGAGACGAGAGAGTGA 423 0.4468 MSWHQHCVSVHSNPSLTISWNKKAFNLRASLFDHPLASRIMVTNLSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENMDHKYLDGRVVCVELAKPGKNDFGRYPRTCGPPSKKEDETRE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0121 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 108 IPR000504 GO:0003723
Vvi1g0121 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vvi1g0121 140 SUPERFAMILY RNA-binding domain, RBD 38 128 IPR035979 GO:0003676
Vvi1g0121 140 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 38 135 - -
Vvi1g0121 140 CDD RRM_SF 40 112 - -
Vvi1g0121 140 SMART rrm1_1 39 112 IPR000504 GO:0003723
Vvi1g0121 140 Gene3D - 28 139 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0121 Vvi-Chr1 1128845 1132221 Dispersed/Tandem