Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0119 ATGATGAAAGGCTCTTGGGCAATATGCATCCTGCTACTCTTATCACTACACAAACCCACATTTTCCTCAATCCACCAGAAGCTCTCGGAGTTTCAAAGCAGGCTTCAGAATACAGCACTACCTCCATTTCCATCACTAGATGGGTCGCAGAATGGGAGAGTGTTCTACCCTATTGCATATGGGGCTGATCCAACTGGGGTGAATGAGAGCAGTGATGCAATACTCAGTGCTTTGGCTGATGCTTTCAGTATTCGAAATGGGGTTGAGATGTTGCCTGGAATCACTGATTTGGGTGGTGTGGTCATAGATTTACAAGGTGGAAACTACAAGATCAGCAAACCCATTAGGTTTCCGGCTGGTGGAGGAAATGTTCTGGTGTGCCAAGGGACTCTGCGGGCATCAGACACTTTTCCAGACGATGAGCATCTCATTGAATTATGGTCACCAAATTCTCATAAACTCAACACATCCTCCATCAACCCTGGTGATTTCCCCATCATCAAAGCCCAAAACAACCCGATCTACTATGAAGACATCACTTTCAGAGACATCCTCTTCGATTCCAACAACAGCGGAGGTGGTCTTTTCATGATAGACACCGCCAGAATCCGCATCAACAACTGCTTCTTCCTCCACTTCACCACCCAAGGAATTCTAGTCCAGAAAGGCCACGAGAACTTCATTTCCTCCTCCTTTCTCGGCCAGCATTCAACCGTCGGCGGGGACAGGAGCGAGAGAGACTTCTCTGGCACCGCCATTGATCTTGCTGGCAACGACAATGCAGTCACTGATGTCGCCATCTTCTCAGCTGCCATTGGAGTTTTACTCAGAGGACAGGCCAATATAATCACTGGGGTGCACTGCTATAACAAGGCTACGGGCTTTGGAGGCGTTGGGATACTGGTGAAGGCGGGTGGCTCACTTACTAGAATCAGCAACTGTTACTTGGATTTCAATGCGATAGTGATGGAAGATCCAAGTCAAGTTCATGTCACAAATGGATTCTTCCTTGGAGATGGAAATGTGGTTCTGAAATCAGTCCAAGGCCATGTCCGAGGTCTCAACATTGTTGATAATATGTTCAATGGCAACCCCTCGAACATGAAGGCCATTGTTGAGCTAGATGGTCAGTTCACTGACATTGATCAGGTGGTTGTGGACAGAAACAATGCGATTGGGATGAGCCTGAAATCGACAGTGGCGAGATTGACAATTCCCGGAAATGGGACTCACAGGGTTGCAGATTTCTCCTCCCTGCTGCTGTTCCCAAACCGGATCAATCATTTTCAGTACTCGGTTTACGGTCAAGGGGGGTCTGGGTTTGTAGCTCATTCAGTGACCAATGTGTCCAATAATATGCTGGTTGTGGAGAGCCAGAATCCTATTCAAGGGCTTGTTTCCATTGTTGTTGAGCAGTGA 1419 0.475 MMKGSWAICILLLLSLHKPTFSSIHQKLSEFQSRLQNTALPPFPSLDGSQNGRVFYPIAYGADPTGVNESSDAILSALADAFSIRNGVEMLPGITDLGGVVIDLQGGNYKISKPIRFPAGGGNVLVCQGTLRASDTFPDDEHLIELWSPNSHKLNTSSINPGDFPIIKAQNNPIYYEDITFRDILFDSNNSGGGLFMIDTARIRINNCFFLHFTTQGILVQKGHENFISSSFLGQHSTVGGDRSERDFSGTAIDLAGNDNAVTDVAIFSAAIGVLLRGQANIITGVHCYNKATGFGGVGILVKAGGSLTRISNCYLDFNAIVMEDPSQVHVTNGFFLGDGNVVLKSVQGHVRGLNIVDNMFNGNPSNMKAIVELDGQFTDIDQVVVDRNNAIGMSLKSTVARLTIPGNGTHRVADFSSLLLFPNRINHFQYSVYGQGGSGFVAHSVTNVSNNMLVVESQNPIQGLVSIVVEQ* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0119 472 Gene3D - 58 465 IPR012334 -
Vvi1g0119 472 SUPERFAMILY Pectin lyase-like 53 450 IPR011050 -
Vvi1g0119 472 FunFam Polygalacturonase QRT3 58 467 - -
Vvi1g0119 472 PANTHER POLYGALACTURONASE QRT3 22 472 IPR039279 GO:0004650
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0119 Vvi-Chr1 1115322 1118841 Tandem