Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0118 ATGGAAGCAATATCAGTGTCTATGTTAATGGGGTTGGCCATGGCCATGGCTAGCTTGCTTATAATCCGGGTTTCCGGCCAAGATTCTCCGGTGGATCACTTTTCCGGGGGACATTACAGCCAACAAATGCGAAAAATGAAAGCCCTGAAGACCTCATTGCTCCGCCGTGACTCGGTTTCTCTTCCCCCGAGCTCAGCCGCTGCTCCTTCTCCTAGCGGGAGTCCTTCACAGGTCGGATCAGCTCCACGTCTGTATCTCGTGACATCGTACGGTGCGGATCCAACGGGAGTGGCCGATAGTACGGAGGCCATTCTTGGGGCGTTATCGGACGCGTTTAAGGGGCCCAGTGACGGGGTCTTGATGGAGGGAATTGCAAATCTGGGAGGTGCACGGATTGATCTGGAAGGCGGCAGTTACCTGATCAGCAGACCCCTGAGGTTTCCGGCCACCGGCGCTGGAAACATAATGATCCATGGAGGAACACTGAAAGCATCGGATAATTTTCCGGCTGATGGCTACCTCATTGATTTATCTTCTAGCTCTAGCAACCAGAAGAAAGAAAACAACCAGACCACCGTGGCTGACCAGCTAATTTCTTCATCATCAACCTATAACTACGAATTCATCAGCCTCAGAGACCTCATGTTGGATTCCAACTACCGGGGCGGCGGCATTGCAGTCATAAACTCTCTCAGAACCACCATAGACAACTGCTACATCGCCCATTTCAACACCACCGGAATCCTCATCCAAGGTGGCCACGAGACCCTCGTCCACAGCTCCTTCCTCGGTCAGCACATCACCGCCGGGGGCGACCCCGGTGAGAGGAGCTTTTCCGGCACGGCCATAAACATCGTCGGCAACGATAACGCCATCACCGACGTGGTAATATATTCAGCGGCAGTGGGCGTGATGGTGTCCGGCCAAGCCAACACCCTCTCCGGGGTTCACTGCTATAACAAAGCCACTGGGTTCGGGGGCACCGGGATATACCTCAAGCTGCCGAGCTTGACACAGACCCGGATCGTGAACTGTTACTTGGACTACACCGGGATTGTTGCAGAAGACCCAGTTCAGCTTCATATCTCTAGCAGCTTCTTCCTGGGCGATGCCTACATCGTCTTCAAGTCCATTAATGGCGTAGCCAGAGGGGTCAGCGTGGTGGGCAACATGTTCAGTGGGTCAGGAAAAGGGGTGGAGATTGTTCAGTTGGATCAGAAGAATGGACCCTTCAAGGAGATTGATCAAGTGGTTGTCGATGGAAACAATGTGAATGGAATGAAGGTGAGAGCCACAGTTGGAAGGGACTCAACTCAAGGTAATGGAACCTCATGGAGTATTGACTTCAATCCAATTCTTCTGTTTCCTAACCATATAAGACATGTACAATACTCCCTCCTAACTACCGCTGGCTCCTCCTTCCCTCTCCATGCCCTGAGAAATGTGTCCGGTAACCGGGTTGTGATCGAATCCAATGTTGCAGTTCCGGCAAGTGTTTTTGTCACGGTGGATCAATGA 1518 0.5224 MEAISVSMLMGLAMAMASLLIIRVSGQDSPVDHFSGGHYSQQMRKMKALKTSLLRRDSVSLPPSSAAAPSPSGSPSQVGSAPRLYLVTSYGADPTGVADSTEAILGALSDAFKGPSDGVLMEGIANLGGARIDLEGGSYLISRPLRFPATGAGNIMIHGGTLKASDNFPADGYLIDLSSSSSNQKKENNQTTVADQLISSSSTYNYEFISLRDLMLDSNYRGGGIAVINSLRTTIDNCYIAHFNTTGILIQGGHETLVHSSFLGQHITAGGDPGERSFSGTAINIVGNDNAITDVVIYSAAVGVMVSGQANTLSGVHCYNKATGFGGTGIYLKLPSLTQTRIVNCYLDYTGIVAEDPVQLHISSSFFLGDAYIVFKSINGVARGVSVVGNMFSGSGKGVEIVQLDQKNGPFKEIDQVVVDGNNVNGMKVRATVGRDSTQGNGTSWSIDFNPILLFPNHIRHVQYSLLTTAGSSFPLHALRNVSGNRVVIESNVAVPASVFVTVDQ* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0118 505 MobiDBLite consensus disorder prediction 59 80 - -
Vvi1g0118 505 Pfam Pectate lyase superfamily protein 87 324 IPR024535 -
Vvi1g0118 505 PANTHER POLYGALACTURONASE QRT3 20 505 IPR039279 GO:0004650
Vvi1g0118 505 FunFam Polygalacturonase QRT3 87 500 - -
Vvi1g0118 505 SUPERFAMILY Pectin lyase-like 81 434 IPR011050 -
Vvi1g0118 505 Gene3D - 87 465 IPR012334 -
Vvi1g0118 505 SMART pbh1 230 252 IPR006626 -
Vvi1g0118 505 SMART pbh1 152 177 IPR006626 -
Vvi1g0118 505 SMART pbh1 382 403 IPR006626 -
Vvi1g0118 505 SMART pbh1 287 308 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0118 Vvi-Chr1 1107739 1109759 Tandem