Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0117 ATGGCTCATTCATATGTGAGGAGAATCTCGAAGCCTCAAATGATGATCGTCGTTGTCACATCCTCATCCTCGATTTTCTCTTTCTGTTTCGCGCTTTCACTGCTGGCTTTCTTTGCTTCTGCTCATATTCTCACTGAGGGCAAGAACAGTGATTTGTTTCCTGAAGTTCTACGGGAAGAAGCAGTGGCAAGGCTCTATGAACTTGGAAAGGTAAGCGACGCTGAGGGCTATCTTGAGCGGACCTTCTTGAGTCCAGCGTCTATAAGGGCAGGAAATCTTATTCGAGAATGGATGGAGGATGCCGGTTTGAGAACGTGGATGGACCAAATGGGCAATGTACATGGTCGAGTTGAAGGAATGAATCCAAGTGCTGATGCTTTGTTAATTGGTTCTCATTTGGATACGGTTGTTGATGCTGGAATATTTGATGGGTCACTAGGCATAATTTCTGCTATCTCTGTGTTGAAGGTTTTGAATATCACTGCCAAGTTACAGAAGTTGAGGCGGCCAATTGAGGTGATTGCATTTAGTGATGAGGAGGGAGTTAGGTTTCAGTCCACCTTTTTAGGAAGTGCAGCTGTAGCTGGTGTTTTACCAGCTTCAGCCTTGCAGATATCTGATAAGAGTGGTGTAACAGTGCAAAATGCTCTTATGGATAACTCTATAGAAGCTACAGAGGAAACATTGTCTCAACTGAAGTATGACCCAAAATCTGTTTGGGGTTATGTTGAGGTTCACATTGAACAAGGACCTGTACTAGAAGGGATTGGTCTTCCTCTAGCTGTGGTGAAAGGCATAGCAGGACAGACACGGCTAAAGGTAACAGTGAGAGGTTCACAAGGGCATGCTGGAACGGTCCCAATGTCCATGCGCCAGGATCCTATGGCTGCTGCTGCTGAATTAATTGTTCTATTGGAAAGCCTTTGCAAACGTCCCAAGGATTTTCTATCATATGATGGTCAATGTAATGGTTTTGCAGTTGAATCTCTTTCTGGTTCCCTGGTCTGTACTGTTGGAGAGATATCATCCTGGCCAAGCGCAAGTAATGTGATTCCAGGACAGGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGGCGTGAGGCGGTCCTTTATGAATTATCTGACCGGATGTACCAAATATGTGAGAAGCGTTCTGTTTCTTGCACCATTGAGCGGAAGCATGATGCAAATGCTGTGATCTGCGATACTGAATTGAGCACACAGCTGAAGTCTGCTACATACTCTACACTCAAAAGAATGGAAGGCGAGATTCAAGGTGATGTGCCTGTGCTGATGAGTGGAGCAGGGCACGATGCCATGGCAATGTCCCATTTAACTAAGGTTGGCATGCTGTTTGTGCGGTGTCGCGGGGGAATCAGTCACTCTCCTGCAGAGCATGTGTTGGACGAGGATGTCTGGGCTGCTGGCTTGGCCATTCTAGCATTCCTGGAGACCCACTTGTAA 1473 0.4596 MAHSYVRRISKPQMMIVVVTSSSSIFSFCFALSLLAFFASAHILTEGKNSDLFPEVLREEAVARLYELGKVSDAEGYLERTFLSPASIRAGNLIREWMEDAGLRTWMDQMGNVHGRVEGMNPSADALLIGSHLDTVVDAGIFDGSLGIISAISVLKVLNITAKLQKLRRPIEVIAFSDEEGVRFQSTFLGSAAVAGVLPASALQISDKSGVTVQNALMDNSIEATEETLSQLKYDPKSVWGYVEVHIEQGPVLEGIGLPLAVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAELIVLLESLCKRPKDFLSYDGQCNGFAVESLSGSLVCTVGEISSWPSASNVIPGQVTFTVDLRAIDDMGREAVLYELSDRMYQICEKRSVSCTIERKHDANAVICDTELSTQLKSATYSTLKRMEGEIQGDVPVLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDEDVWAAGLAILAFLETHL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0117 490 PANTHER ALLANTOATE DEIMINASE-RELATED 30 490 IPR010158 GO:0016813
Vvi1g0117 490 Gene3D Zn peptidases 71 481 - -
Vvi1g0117 490 NCBIfam hydantoinase/carbamoylase family amidase 61 483 IPR010158 GO:0016813
Vvi1g0117 490 Pfam Peptidase dimerisation domain 268 383 IPR011650 -
Vvi1g0117 490 SUPERFAMILY Zn-dependent exopeptidases 58 488 - -
Vvi1g0117 490 FunFam Allantoate deiminase 268 400 - -
Vvi1g0117 490 Pfam Peptidase family M20/M25/M40 128 483 IPR002933 GO:0016787
Vvi1g0117 490 CDD M20_bAS 62 487 - -
Vvi1g0117 490 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 127 136 IPR001261 -
Vvi1g0117 490 Gene3D - 268 400 - -
Vvi1g0117 490 SUPERFAMILY Bacterial exopeptidase dimerisation domain 268 402 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0117 Vvi-Chr1 1098524 1102566 Dispersed