Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0112 ATGGGGAAGAAGAAGAAGAGAGTGGCAGCGAAGGTGTGGTGCTACTACTGCGATCGTGAATTCGAGGACGAGAAGATACTGGTACAGCACCAGAAGGCCAAGCACTTCAAATGCCATGTCTGTCACAAGAAGCTCTCCACCGCCGGTGGCATGGTCATCCACGTCCTCCAGGTCCACAAAGAGACCGTTTCCAAGGTTCCCAATGCAAAACCTGGCCGCGAGTCAACCGAAATTGAAATATATGGAATGGAAGGAATCCCACATGAAATCTTAGCAGCTCATTATGGAGAGGAAGATGAAGATGTCCCATCAAAATTGGCTAAAGTGGAGATCCCAAGTTCACAACTTGGTGGTGGTGCAGTACCTGGAACTTTAGGAATTGGAGTTCCTCCTCAACCAGCATTAGGTGCAATGCCACCAGTTTACAATCCTGCATTAGCAGTGCCTCCTGCTGGTTGGCCGGTTCCTGCTCGTCCCCAGCCTTGGTACTCTCAGCACCCAGCAATCTCTATTCCTCCTGCTCCATTGGGGATGACACAACAGCCTTTGTTTCCAATACAACCTGTCAAGCCTCCTCTGCCATCCACTATGTCTTCTGCTCTTCAACCATCATTGCAAATAACTCCTCCTGGGCTTCCCATACCTTCACCTTCTGCTCCTTTACCTCAACCCTTGTTCCCTGTCGGTGTTAATAACAATTTACCTACTAAAAATTCACCATTTTCTACACCTATGCTTTCAACAAGTATTCCATTAAGCTCTCAAGCAGAACTTAATAGCTCAATTGAAGCACATTCCAGCACTAACAGTTCTCTTGCAAGTAGCTACAGTGCCCCAAGCATTCAAGGTGGGCCATCAATCAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCATTAATGAAGTACCAGGTGCATGATGAAACTAGCCAGCTTGCTGCAATCAACTTCGAGGATTCTCCAACCTAG 1092 0.4734 MGKKKKRVAAKVWCYYCDREFEDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKETVSKVPNAKPGRESTEIEIYGMEGIPHEILAAHYGEEDEDVPSKLAKVEIPSSQLGGGAVPGTLGIGVPPQPALGAMPPVYNPALAVPPAGWPVPARPQPWYSQHPAISIPPAPLGMTQQPLFPIQPVKPPLPSTMSSALQPSLQITPPGLPIPSPSAPLPQPLFPVGVNNNLPTKNSPFSTPMLSTSIPLSSQAELNSSIEAHSSTNSSLASSYSAPSIQGGPSINSHSYASGPNTGGPSIGPPPVIANKVPATQPAGNEVYLVWDDEAMSMEERRMSLMKYQVHDETSQLAAINFEDSPT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0112 363 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Vvi1g0112 363 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Vvi1g0112 363 SMART c2h2final6 36 59 IPR013087 -
Vvi1g0112 363 SMART c2h2final6 12 35 IPR013087 -
Vvi1g0112 363 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Vvi1g0112 363 CDD SUF4-like 13 92 - -
Vvi1g0112 363 Gene3D Classic Zinc Finger 2 66 - -
Vvi1g0112 363 PANTHER ZINC FINGER PROTEIN 207 1 354 - -
Vvi1g0112 363 MobiDBLite consensus disorder prediction 270 298 - -
Vvi1g0112 363 MobiDBLite consensus disorder prediction 270 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0112 Vvi-Chr1 1072360 1078245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0112 1 355 C2H2 Transcription Factor Family AT1G30970 61.202 6.43e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0112 None None None