Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0107 ATGAAGAGAAGAGAGAGAGAAGATCATCACCATAGCAATACTGCACTTAGAAAGGGCACTTGGAGTGAAGAAGAGGATCGCTTGCTCAGAGAATATGTAGACAAGTATGGTCAAGGCAACTGGAAGCACATCACTTCCAAAACAGGGCTTCGCCGTTGCCGGAAGAGTTGCAGGTTAAGATGGTTGAACTATCTTCGACCAGACATCAAGCGCGGCAGCTTTGGAGTTGATGAGGATGATCTGATTATCAGACTCCATAGACTCTTGGGCAACAGATGGACTCTAATTGCAGGAAGGATTCCAGGAAGAACATCCAATGACATTAAAAACTATTGGAACACTTACTTGAGCAAGAAGATTCAATCAGAAGCCGACAAAAGTGCAGGCTTGGTGAAACATAACACCTGTACTTCAGCCGTGCATTCTGAGACATTGGGAAGTGAGTTTGAGACCTGCTCAGAACAAAAACAAGGAGATGAGGAAGAAGAAGATACAGTATCATTCTGGAGGAGACTTTTGTTAGAGGGAGAATATAGGGAACTTGATTTGAGAGTGAAAAACAAAGAGATATTGCAGGTTGAACACGAAGAAGAAGATGATGACGACTTGTTTCAGGGGCTGGATGATTTGCTTCATGATGTGGACATTTTAGATTGCTTTGCTTAA 666 0.4279 MKRREREDHHHSNTALRKGTWSEEEDRLLREYVDKYGQGNWKHITSKTGLRRCRKSCRLRWLNYLRPDIKRGSFGVDEDDLIIRLHRLLGNRWTLIAGRIPGRTSNDIKNYWNTYLSKKIQSEADKSAGLVKHNTCTSAVHSETLGSEFETCSEQKQGDEEEEDTVSFWRRLLLEGEYRELDLRVKNKEILQVEHEEEDDDDLFQGLDDLLHDVDILDCFA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0107 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Vvi1g0107 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 159 - -
Vvi1g0107 221 CDD SANT 20 65 IPR001005 -
Vvi1g0107 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Vvi1g0107 221 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vvi1g0107 221 CDD SANT 77 116 IPR001005 -
Vvi1g0107 221 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Vvi1g0107 221 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Vvi1g0107 221 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Vvi1g0107 221 Gene3D - 73 140 - -
Vvi1g0107 221 Gene3D - 18 70 - -
Vvi1g0107 221 FunFam - 73 142 - -
Vvi1g0107 221 SMART sant 17 67 IPR001005 -
Vvi1g0107 221 SMART sant 70 118 IPR001005 -
Vvi1g0107 221 FunFam Myb transcription factor 18 70 - -
Vvi1g0107 221 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0107 Vvi-Chr1 1017874 1019921 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g0107 Myb_DNA-binding 1.1e-15 CL0123