Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0106 | ATGGACTGCTTCTATGTTCAAGTGGAGCAACGGAAGCAACCCGATTTGAGGGGTTTGCCTACCGCAGTGGTGCAGTACAACTCCTGGAAAGGCGGGGGCTTGATCGCTGTCAGCTATGAGGCGCGTAAATTTGGCGTCAAGCGTTCAATGCGAGGTGATGAGGCAAAGCAAGTATGCCCGCAAATTCAGCTGGTTCAGGTCCCAGTTGCCCGTGGTAAAGCGGACTTGAACGTATACCGCAATGCCGGTTCAGAGGTGGTTTCTATTCTTGCAAGGAAGGGGCGATGTGAGCGGGCTTCAATTGATGAAGTGTATCTTGATCTTACTGATGCGGCAGAAGCAATGCTAGCAGAAATGCCTCCTGAGAGCTTGGAAGCAATTGATGAAGAAGCTCTTAAGTCACATGTTTTGGGGCTTAATGAGGGTGGAAATGATATCAAAGAAAGTGTGAGGGTGTGGCTCTGCAGGAGTCAAGCAGATCACCGTGACAAGTTGTTAGCTTGTGGGGCCCTTATTGTTGCAGAACTTAGGATGCAAGTTTTTAGGGAGACTGAATTTACATGTTCTGCTGGCATTGCCCATAATAAGATGTTGGCCAAATTGGCAAGTGCCATGAATAAACCTGCTCAACAAACCATTGTGCCCCTCTCATGTGTAAGAGGATTGCTTGGTTCTTTGCCTATAAAGAAAATGAAACAGCTTGGAGGAAAGCTTGGGAGTTCCTTACAAAGTGATCTTGGTGTGAACACCGTTGGAGATCTCTTGCAGTTCTCAGAGGAGAAGCTTCAAGAATGTTATGGCATAAATACTGGTACTTGGTTATGGAATATTGCTAGAGGGATCAGTGGGGAAGAAGTTGAGAGTCGTCTGCTTTCTAAGAGCCATGGTTCTGGGAAGACATTTCCTGGCCCCAAGGCTCTGAAAACAATTGCTTCTGTTGAAAACTGGCTCAATGAACTTTGTGAAGAACTGGATGAACGACTCCGTTCTGACTTGGAGCAAAACAAGAGGATTGCACACACCCTCACGTTGCATGCTAGAGCATACAAGTCCAATGACTCGGATTCACATAAAAAATTCCCTTCTAAGTCATGTCCATTGAGGTATGGGATTGCCAAGATTCAAGAAGATGCCTTGAATTTATTTCAAGCTGGATTGCGTGAATATTTGGGATCGTGCAAAGTAAAGACTCGAGCAAATCAGTGCAGTGGATGGAGCATAACAGCTCTTTCTGTTTCTGCAAGTAAAATAGTTGCCATCCCAACTGGAACATGTTCAATCATGAAATACTTCCATGGCCAAGACCTGTCATCCTCTTCATTAAAGCAACCACAGGACAGGTCCACTGAAGAAGCTGCATCATTATCACATTCAGGAAGTGAGAGCTATCTGGGATTGAATCCCAGAGAAACACAAAAGCAGTTTCCTGGTGAAGAAACTAGGATAAATTATGATATGCCTAACCTGGATCAGCAGGAAAAGAAAAGAAAAATGTGGGAAGACCAGGGAACACCGTCAATCTTGAGATTCTTTAAGAGGCACAATCCCACTTCCTCTTTGTCTGAGCAAGAGCAAGTTGAACCCATCCAAGATACCAAAGTGTCATCATCCTCAGGTTTGTGGACTACAAGTGAGAGCTGTTCAGAAACAGGTCAAATTCAGCTGCCAAAAGAAATGATGGTTGCTGAAACTGAGTCCAATGCTAGACGCGATAGTTCAGCCGCCAAAAGAAATGATGGTTACAAGATTGATGACATCGACTGCTCTGTGATGGATGAGCTACCGCCAGAAATTCAAGAAGAAGTCCAAGCTCGGAGCTCAGAAGATCTAAATCAAGTTCAGCTGCCAAAAGAAATGATGGTTGCTGAAACTGAGTCCAATGCTAGACGCGATAGTTCAGCTGCCAAAAGAAATGATGGTTACAAGATTGATGACATCGACTGCTCTGTGATGGATGAGCTATCGCCAGAAATTCAAGAAGAAGTCCAAGCTTGGAGCTCAGAAGAACTAAATCAAGTTCAGCTGCCAAAAGAGACGATGGCTGCTGAGACTGGGCCTAACGATAGAAGGTGTAGTTTAGGCGGGGGTGCAGAAAGAAGGGAAACATGGAGTTACAAGATCGATGAGATTGACCCTTCTGTGATGGATGAGCTACCCCCAGAAATCCGAGCCGAAGTCCAAGCTTGGCTCCGGCCTCAGAAGCCGGCCAAGACAGGAAAACGAGGTTCTAGCATTGCCCACTATTTCTCACCTATGAAAAACAAATAG | 2268 | 0.4537 | MDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEARKFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGLNEGGNDIKESVRVWLCRSQADHRDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELPPEIQEEVQARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETMAAETGPNDRRCSLGGGAERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK* | 756 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0106 | 755 | MobiDBLite | consensus disorder prediction | 677 | 696 | - | - | |
| Vvi1g0106 | 755 | FunFam | DNA polymerase eta | 3 | 70 | - | - | |
| Vvi1g0106 | 755 | ProSiteProfiles | UmuC domain profile. | 1 | 235 | IPR001126 | GO:0006281 | |
| Vvi1g0106 | 755 | SUPERFAMILY | DNA/RNA polymerases | 1 | 286 | IPR043502 | - | |
| Vvi1g0106 | 755 | MobiDBLite | consensus disorder prediction | 732 | 755 | - | - | |
| Vvi1g0106 | 755 | Gene3D | - | 71 | 214 | IPR043128 | - | |
| Vvi1g0106 | 755 | FunFam | DNA polymerase eta | 286 | 418 | - | - | |
| Vvi1g0106 | 755 | Gene3D | - | 286 | 419 | IPR036775 | GO:0003684|GO:0006281 | |
| Vvi1g0106 | 755 | Gene3D | - | 3 | 70 | - | - | |
| Vvi1g0106 | 755 | MobiDBLite | consensus disorder prediction | 517 | 552 | - | - | |
| Vvi1g0106 | 755 | FunFam | Polymerase (DNA directed), eta | 228 | 284 | - | - | |
| Vvi1g0106 | 755 | Gene3D | - | 228 | 284 | - | - | |
| Vvi1g0106 | 755 | FunFam | DNA polymerase eta | 71 | 214 | - | - | |
| Vvi1g0106 | 755 | Pfam | impB/mucB/samB family | 1 | 203 | IPR001126 | GO:0006281 | |
| Vvi1g0106 | 755 | PANTHER | DNA POLYMERASE ETA | 1 | 746 | - | - | |
| Vvi1g0106 | 755 | Pfam | Ubiquitin binding region | 708 | 726 | IPR025527 | - | |
| Vvi1g0106 | 755 | Pfam | Ubiquitin binding region | 586 | 602 | IPR025527 | - | |
| Vvi1g0106 | 755 | SUPERFAMILY | Lesion bypass DNA polymerase (Y-family), little finger domain | 291 | 419 | IPR036775 | GO:0003684|GO:0006281 | |
| Vvi1g0106 | 755 | MobiDBLite | consensus disorder prediction | 438 | 486 | - | - | |
| Vvi1g0106 | 755 | MobiDBLite | consensus disorder prediction | 438 | 469 | - | - | |
| Vvi1g0106 | 755 | PIRSF | DNA_pol_eta | 1 | 736 | - | - | |
| Vvi1g0106 | 755 | Pfam | impB/mucB/samB family C-terminal domain | 292 | 417 | IPR017961 | GO:0003684|GO:0006281 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0106 | Vvi-Chr1 | 1002569 | 1009495 | Dispersed |