Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0101 | ATGCCCACCACGAAGAGTAGTCTCAGTCTCAAGAAGCTTTCTTCAATCCGAAACCTATGTAAGTTCCCATACTTCTGTTGGTTTTTTTCTTTCCGCAGCAAAACGACTCTAAGCCCATATGAAAGCGACGCTCCAATTCCTGATCAGATCTTCAAATCGGCTTCCCAAATGGGTTCTTACAAATCAGGCGATTCCACTTTCTATTCTCTCATTGAAAACTATGCCAATTCCGGCGACTTTGGGACTTTGTTTCAGGTTTTCGATCGAATGAAGCGCGAGCGCAGGGTGTTTATTGAAAAGAACTTCATTTTAGTGTTTAGGGCTTATGGGAAAGCCCACTTACCTGAGAAAGCCATCGAGTTGTTTGGTAGAATGGTGGATGAGTTTCAATGTAGGCGAACTGTTCGATCATTTAATTCGGTTCTTAATGTTATAATACAAGAGGGTCTTTTTCACCGAGCTTTGGAGTTTTATGAATGTGGGGTTGGTGGGAAGACGAATATTTCCCCCAATGTGCTTAGTTTTAATTTGGTTATTAAAGCTATGTGTAAATTAGGATTGGTTGATAGAGCCATTGAAGTGTTCAGAGAAATGGCCATTCAGAAATGTGAACCCGATGTGTTCACTTACTGTACTTTGATGGATGGGTTGTGTAAGGAGGATAGGATTGATGAGGCGGTTTTGCTGCTGGATGAGATGCAAATCGAAGGTTGCTTCCCAAGCTCAGTGACATTTAATGTGTTGATTAATGGGTTGTGCAAGAAGGGGGACATGGTCCGTGTGACAAAGCTTGTGGATAATATGTTCCTCAAAGGGTGTGTTCCAAATGAAGTGACTTACAATACGATTATCAATGGCTTGTGTCTCAAGGGGAAGTTGGACAAGGCGGTTAGTCTTTTGGATCGAATGGTCGCAAGTAAATGTGTGCCTAATGATGTTACCTATGGAACACTCATCAATGGACTCGTTAAGCAAGGAAGATCTGTTGATGGAGTCCATTTATTGAGTTCTTTGGAGGAAAGAGGGCATCATGCGAATGAATATGCATATTCAACCCTTATTAGTGGGTTGTTTAAGGAGGAAAAGTCCGAAGAGGCTATGGGATTGTGGAAGAAGATGGTGGAAAAAGGATGCCAACCCAATATTGTTGTTTATAGTGCTCTAATAGATGGTTTGTGTAGAGAAGGAAAATTAGATGAAGCCAAGGAAATTCTTTGTGAGATGGTGAATAAGGGTTGTACACCCAATGCTTTCACCTATAGTTCCTTGATAAAGGGTTTCTTTAAGACAGGTAATAGCCAAAAAGCAATTCGTGTGTGGAAAGAGATGGCCAAGAATAATTGTGTGCCTAATGAGATTTGTTATAGTGTACTCATCCATGGCCTATGTGAGGATGGGAAGCTGAGGGAGGCTATGATGATGTGGACACACATGTTGGGCCGTGGACTTAGACCTGATGTTGTGGCTTACAGTTCAATGATTCATGGCCTATGTAATGCTGGTTCAGTAGAAGTGGGTTTAAAGCTTTTCAATGAGATGCTCTGTCAGGAGTCTGATTCTCAGCCAGATGTAGTCACTTATAACATACTTCTCAGAGCTTTGTGTAAGCAGAATAGCATCTCTCATGCCATTGATCTTCTAAACAGTATGTTGGATCGAGGTTGCAATCCTGACTTAATTACGTGTAATATTTTCTTGAACGCTTTGAGAGAGAAGCTGAACCCACCTCAAGATGGGAGAGAATTCCTAGATGAGCTTGTGGTCCGGCTACATAAGCGGCAGAGAATTGTAGGTGCTGCCAAAATTATAGAAGTGATGCTGCAAAAGTTTCTTCCTCCAAACGCCTCCACTTGGGAAAGGATTATTCCGGAACTTTGCAAACCTAAGAAGGTTCAAGCAATCATTGATAAGTGTTGGAGCAGCCTATTTTTCTAA | 1935 | 0.4165 | MPTTKSSLSLKKLSSIRNLCKFPYFCWFFSFRSKTTLSPYESDAPIPDQIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWSSLFF* | 645 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 451 | 485 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 418 | 452 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 453 | 487 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 348 | 382 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 313 | 346 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 243 | 277 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 208 | 241 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 278 | 311 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 488 | 516 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 383 | 417 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 174 | 207 | IPR002885 | - | |
| Vvi1g0101 | 644 | NCBIfam | pentatricopeptide repeat | 525 | 558 | IPR002885 | - | |
| Vvi1g0101 | 644 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 381 | 633 | - | - | |
| Vvi1g0101 | 644 | Gene3D | Tetratricopeptide repeat domain | 49 | 162 | IPR011990 | GO:0005515 | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat family | 170 | 219 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat family | 522 | 569 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat family | 275 | 324 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat family | 380 | 429 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat family | 458 | 499 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 171 | 205 | IPR002885 | - | |
| Vvi1g0101 | 644 | SUPERFAMILY | HCP-like | 343 | 556 | - | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat | 349 | 378 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat | 66 | 93 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat | 105 | 127 | IPR002885 | - | |
| Vvi1g0101 | 644 | Gene3D | Tetratricopeptide repeat domain | 164 | 270 | IPR011990 | GO:0005515 | |
| Vvi1g0101 | 644 | Gene3D | Tetratricopeptide repeat domain | 470 | 595 | IPR011990 | GO:0005515 | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | IPR002885 | - | |
| Vvi1g0101 | 644 | Gene3D | Tetratricopeptide repeat domain | 272 | 361 | IPR011990 | GO:0005515 | |
| Vvi1g0101 | 644 | Gene3D | Tetratricopeptide repeat domain | 362 | 469 | IPR011990 | GO:0005515 | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 241 | 275 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 486 | 520 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 416 | 450 | IPR002885 | - | |
| Vvi1g0101 | 644 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 206 | 240 | IPR002885 | - | |
| Vvi1g0101 | 644 | Pfam | PPR repeat | 237 | 268 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0101 | Vvi-Chr1 | 979517 | 981451 | Dispersed |