Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0089 ATGAACCCAGATCTAGCTGGAGGGATGGCAGACGGGGCTGTGTCGTTTCTTCTTCAAAAACTTGAAGCTTTTGCAAGTACAGAATGGAACTTGCAGGAAAATATCAGGAATGGAGTCCGTGAGTTACAAAGGGAGCTGTGGAGAATAGAAGCCATGATGAGAGATGCTGATGCAAAGAAAGATTATGATAACCAATTCAACGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTGTTCAGACTCCACTGGGATCAAGAATCAGTGTGGCGCCACTTGAAAATGTGGCACTCCATTAGCAACCTGATACAGGATATTAACACAAGGCTCGCGATCATTAAGCAGACAAAGGAGAGGTACCAGATCATTAAGGAGATAAATGAGAGGTATCCGATGATGGTCCCCACCAATTCAGTTAGTTCGGAAACCAACACATACCATAATGTGAGAGCAGCTCCTTTGATCCTCGGCTGGGGCAATAACACCATGGGCATTGATGAGCCTAAAAGGAAGCTGGTTTCTTGGGCATCAAAGTCGAATCAGAAACTCAAGGTTATGTTCCTAGTGGGGATGGCTGGGTTGGGCAAGACAACGCTTGCCTACCGCGTGTACGAGGAGGTGAAGGAGCACTTTGATTGCCATGCCTGGATCATTGCTTCAAAGTACCAAACCATAGATGAAACCTTACGGAGCTTGTTGGAGGAACTTGGCTCTTCAACAGAGGGGTCCGGCATAGTTCTTCTCATGCAGAGACTGCACAATTTTCTCCAGCACAAACGGTATGTTATAGTTGTTGACAATTTATTGGTAAAAGATGTGTGGGAATCCATTAGACTTGCCTTGCCAGATGGTAACGACAATAGAATAATTATCACTACAAGAAGAGGCGATATAGCTAATTCTTGCAGAGATGATTCTATTGATATCCACAAGGTTCAGCCACTGTCACTGCAATGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTTAGGAGATGGCAGCTGTCCTTCAGGCTTGGAGGAAGTCTCGAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGGGTCTTGCGGAGTAAGCCTCGTCAAACTAAATACGAGTGGAAAAAATTACATGATAGCCTTGAGTCTGAATTGAGAAGCGGTGGTGCCCTTTCAGATATTATGAGAGTGTTTTCTGCAAGTTACAAGGATTTACCTTACCATCTCAAGTATTGCTTCTTATACATGAGTATTTTTCCTGAGAATAATCCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAACAGAGGAGAGAGGCAAGACTCTTGAAGAGGTGGGGGAAGAGTACCTGAATGAGCTTATTGGCAGGAGTCTGATAAAGGCAAATGAAATGGACTTTGATGGAAGGCCAATAACTGTTGGAGTCCATAGTCTCATGCATAGGATAATTCTCTCAGTTTCACAAGAGGAGAACTTCTGTACTGTTTGTGCAGGACCAGAAGGAAACTTGACTGACAAACCCCGGCGCCTATCCATCCAGACGGGAAACTTTGATGTGTCTCAGGACTTAACCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTAGGATAAACATTGGTTCGAATTTCAAACTATTGAAGGTTTTGGACATACAAAGCACTCCTTTGGGAAACTTTCCAAGTGCCATTACAGATCTTGTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCAAATCCCTCAGGAACCTACGGCACCTTGAGACCTTGGATCTTAAGCAGACTTTGGTAACAAAGGTACCCAAAGCAGTCCTACAATTGGAGAAACTTCGCCATCTGCTGGTTTATTGCTACAATATGGAAAGTGCACCTTTTGATATTGTTCAGGGGTTCAAGGCACCAAAGGGGATCGACGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGTGGGCAGCACAGAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTAGCAGAAGAACATGGGGCGAGTTTGTGCCTCTCAATTGAAAAGATGCCAAATCTCCACTCCTTGAATGTAACCTCCCTTAATAAGGAGGAGCTTCTGGAGCTTGATGCAATGACCAATCCACCGCCCCTTCTTCAACGCTTGTACCTCAGAGGGCCGTTGGAAAGGTTTCCACGGTGGGTATCTTCTCTACATGACCTGGAGAGAATACGCCTAAAATGGTCTTCACTCACAGAAAACCCGATTGGAGCTCTTCAAAACCTCCCAAATCTGACAGAGTTGCAGTTGCTTGATGCATACACTGGAACCCAGTTGGACTTCAACTCGGGAAAATTTCAGAACCTTAAGATATTAGACCTTGAGCAATTGAAACAACTGAGGTTTATCATAATGGAAGATGGCACATTGCCTTGCCTACAAAAGCTGATCATAAGGCAATGCAATGAGCTGGAACATGTCCCCGTAGGTATTGACGGGCTCCATCATCTCAATGAGTTGCACCTCTGCGATATGCCTGAGAAATTGGTGGCCCAGCTGAAGAAAAACGGTGGTCAATTTCGCCATTTGGTTCACCATATTCCGTATATTCATTCATATAACCAGGGCCAGTTGGAAGATCTTTCTTGA 2706 0.442 MNPDLAGGMADGAVSFLLQKLEAFASTEWNLQENIRNGVRELQRELWRIEAMMRDADAKKDYDNQFNVWIQEVRTEAYAIEDVLDLFRLHWDQESVWRHLKMWHSISNLIQDINTRLAIIKQTKERYQIIKEINERYPMMVPTNSVSSETNTYHNVRAAPLILGWGNNTMGIDEPKRKLVSWASKSNQKLKVMFLVGMAGLGKTTLAYRVYEEVKEHFDCHAWIIASKYQTIDETLRSLLEELGSSTEGSGIVLLMQRLHNFLQHKRYVIVVDNLLVKDVWESIRLALPDGNDNRIIITTRRGDIANSCRDDSIDIHKVQPLSLQWAEQLFYKKAFLGDGSCPSGLEEVSKSILQKCDGLPLGIIEIGRVLRSKPRQTKYEWKKLHDSLESELRSGGALSDIMRVFSASYKDLPYHLKYCFLYMSIFPENNPVKRRRLIRLWIAEGFVTEERGKTLEEVGEEYLNELIGRSLIKANEMDFDGRPITVGVHSLMHRIILSVSQEENFCTVCAGPEGNLTDKPRRLSIQTGNFDVSQDLTCVRTFFSFSTGRINIGSNFKLLKVLDIQSTPLGNFPSAITDLVLLRYLSLRNTNIRSIPKSLRNLRHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYCYNMESAPFDIVQGFKAPKGIDALKNLQKLSFVKASGQHRMIQGLDNLTQLRKLGIVELAEEHGASLCLSIEKMPNLHSLNVTSLNKEELLELDAMTNPPPLLQRLYLRGPLERFPRWVSSLHDLERIRLKWSSLTENPIGALQNLPNLTELQLLDAYTGTQLDFNSGKFQNLKILDLEQLKQLRFIIMEDGTLPCLQKLIIRQCNELEHVPVGIDGLHHLNELHLCDMPEKLVAQLKKNGGQFRHLVHHIPYIHSYNQGQLEDLS* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0089 901 SUPERFAMILY L domain-like 489 868 - -
Vvi1g0089 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 423 IPR027417 -
Vvi1g0089 901 Pfam NB-ARC domain 176 411 IPR002182 GO:0043531
Vvi1g0089 901 Gene3D Ribonuclease Inhibitor 544 893 IPR032675 -
Vvi1g0089 901 Gene3D - 165 318 IPR027417 -
Vvi1g0089 901 FunFam Probable disease resistance protein At1g63360 410 499 - -
Vvi1g0089 901 Pfam Rx N-terminal domain 13 95 IPR041118 -
Vvi1g0089 901 CDD RX-CC_like 10 135 IPR038005 -
Vvi1g0089 901 Gene3D - 12 129 - -
Vvi1g0089 901 PANTHER DISEASE RESISTANCE PROTEIN RP 42 841 IPR044974 GO:0006952
Vvi1g0089 901 Gene3D - 322 409 IPR042197 -
Vvi1g0089 901 Coils Coil 39 59 - -
Vvi1g0089 901 Gene3D - 410 499 IPR036388 -
Vvi1g0089 901 PRINTS Disease resistance protein signature 357 371 - -
Vvi1g0089 901 PRINTS Disease resistance protein signature 803 819 - -
Vvi1g0089 901 PRINTS Disease resistance protein signature 262 276 - -
Vvi1g0089 901 PRINTS Disease resistance protein signature 192 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0089 Vvi-Chr1 901077 903782 Dispersed/Tandem