Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0086 | ATGGCAGATGGGGCTGTGTCGTTTCTTCTTCAAAATCTTGAAGCTTTTGCAACTAGAGAATGGAACTTGCAGGAACATATCAGGAATGGAGTCCATAACTTAAAAAGGGAACTGCGGAGCATAGAGGCCCTGATGAGGGATGCTGATGCAAAGAAAGAGCATGATCACCAATTCAAAGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTATTCAGACTCCACCGGGATCAAGAATCAGTGTGGAGCCACTTGAAAATGCGGCACTCCATTGGCAACCTGATACAGGATATTAACACAAGGCTCGTGATCATTAAGCAGACAAAGGAGAGGTATCAGATCATGGTCTCCACTTCAATTAGCGCTGAAACCAACGCATACCTTAATGTGAGAGTAGCTCCTTTGATCATCGGCAGGGGCGATAACATCCTGGGCATCGATGAGCCTAAAAGGAAGCTGGTTTCTTGGGCATTGGAGTCGAATCAGAAACTCAAGGTTATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACAACGCTCGCCCGCAGCGTGTACGAGATGGTGAAGGAGCACTTTGATTGCCATGCCTGGATCATTGCTTCAAAGTCCAAAACCAAACCTGAAACTTTACGGAGCTTGTTGGAGCACCTTGGCTGTTCGACAGAGGGGTCCAACATAGTTATTCTGATGCATAGACTGCAAAATTTTCTCCAGCCCAAACGGTATGTTATAGTTGTTGACGATTTATGGGTAAAAGATGTGTGGGAATCCATTAGACTTGCCTTGCCAGATGGTAACAACAATAGAATAATTATCACTACAAGAAGAGGCGATATAGCTAATTCTTGTAGAGATGATGATTCTATTGATATCCACAAGGTTCAGCCACTGTCACCGCAATGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTCAAGAAATGGCAGATGTCCTTCAGGCTTGGAGGAAGTCTCCAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAAGCTGTTGTGGGGTAAGCGTCAAAGTACATACGAGTGGAAAAAATTAGATGATAGCCTTGAGTCTGAATTGAGAAGCGGTGGTGGCCTTTCAGATATAATGAGAGTGCTTTCTGCAAGTTACAATGATTTACCTTACCATCTCAAGTATTGCTTCTTATACATGAGTATTTTTCCTGAGAATAATCCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAACAGAGGAGAGAGGCAAGACTCTTGAAGAGGTGGGGGAAGAGTACCTGAATGAGCTTATTGGTAGGAGTCTCATAAAGGCAAATGAAATGGACTTTGATGAAAGACCAATAACTGTTGGAGTCCATAGTCTCATGCATAGGATAATTCTCTCGGTTTCACAAGTGGAGAACTTTTGTACTGTTTGTGCAGGACCAGAAGGAAACTTGGCTGACAAACCCCGACGCCTATCCATCCAGACGGGAAACTTTGATGTGTCTCAGGACTTAACCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTAGGGTAAACATTGGTTCGAATTTCAAACTATTGAAGGTTTTGGACATACAAAGCACTCCTTTGGAAAACTTTCCAAGTGCCATTACAGATCTTCTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCAAATCCCTCAGGAACCTACGGCACCTTGAGACCTTGGATCTTAAGCAAACTCTGGTAAAAGAGCTACCCAAAGCAGTCCTACAACTTGATAAACTTCGCCACTTGCTGGTTTATGCCTACAATATGGGAAGTGTTGTAGAGTTTGATGCCGTTCAAGGGTTCACTGTACCGAGAAAGATCGGAGCAATGAAGAATCTGCAAAAGCTATCATTTGTAAAGGCGAAAAGGCATAACAGAATGATACAGGAGCTCAAAAATCTGACAAAGCTGAGGAAGCTGGGCATTGTAGAACTAGCAAAAGAAGATGGCAATAGCTTGTGCCACTCAATTGAGAAGATGCCGGATCTCCTTTCCTTGGATGTTACCTCCCTTAGTAAGGGGGAGCCTTTGGAGCTTGATGCAATGACCAATCCCCCGCGTCTTCTTCAACGCCTGTATCTCAAAGGGCACTTGCAAAGGTTTCCAAAGTGGGTATCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCCTTATTGTCACAAGACAACCCAATTGAAGCTCTTCAAGATCTTCCAAACTTGATGGAGCTGCAGTTACTTGATGCATACACTGGAACCCAGTTGGACTTCAACTCGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGAGCAATTGAAACAGCTGAGGTTTATCATAATGGAAGATGACACATTGCCTTGCCTACAAAAGCTGATCATAAGGCAATGCAATGAGCTGGAACATGTCCCCGTAGGCATTGACGGGCTTCATCATCTCAATGAGCTGCACCTCTGCGATATGCCTGAGAAATTCGTGGCACTGCTGAAGAAAAGAGGCGGTGAACTTCGCCATTTGCTTCACCGTATTTTGCGTATTCTCTCATATCAACAGGGCCACAATTTGCCGATTTCAGAGAAAAGAGAGAGAGAGATAATGGTCGACCCAGAAATAACTGGAGGGATTGCAGCGAGTACTTTGAGCTTTCTTCTAGTAAAACTCGATGCTTTTGCAATTAGAGAATGGAAATTGCAGGAAAATATCAAAAAGTCTGTCCAAAATTTAGGATGCGAGCTGAGGAACATTCAGGCCATGCTGAGAGATGCTGATTCAAAGGAAGAGCATAGTCACCAATTTACGGTCTGGATTAAAGAGGTCCGCGATCAAGCTTATGCAATCGAGGATGCTCTTGACCTGTTCAAACTCAAACAAGAATCAGTGTGGCGCCGCCTGAAACTGCGTCACTCCATCAACGACTTGATACAGGATATTGAGCGGAGTCTCCAAAACATTCAGCGGACAAAGGAGAGGTATCGCAGCATGGCCTCCTATTCAACCAATGCTGGCAACAACACATACCTTCATGTGAGAGTGGCTCCTTTGTTCATAGGTAACGTTGATACCGTGGGCATTGAGGAGCCTACAAATAAGCTGGTTTCCTGGGCCTTGGAACCGAAACAGAGGCTTGAGGTGATGTTTGTGGTGGGGATGGCTGGACTGGGGAAGACCACTCTTGTCCACAGCGTGTATGAGAGCGTGAAACAGAACTTTGATTGCCATATCTGGATCACTGCTTCAAAGTCCAAAACCAAACTCGATATCTTACGGACCTTGTTGGTGGAGAAATTCGGCTGTACAATCACACAGGGGGGCGATGTGGTTGCTCTGACGCATAAGCTGAGAAAATTTCTCCACAACAAACGGTATGTCATAGTTCTTGATGACTTATGGGTAAAAGATGTTTGGGAGTCCATTAGACTTGCCTTGCCAAATGGTAAGGACAGTAGAATAATTATCACTACAAGGAGAGGCGATATAGCTAATTCTTGGAGAGATGATGATTCTGTTGATATCCACATGCTTCAGCCACTGTCACCGGAAAGGGCTGAGAAACTCTTCTATAAGAAAGCTTTCTCAAGAAATGGCAGATGTCCTTCAGGCTTGGAGGAAGTCTCGAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGACTTTTATCCATCAAGGCTCCAACTAAAAATGAGTGGAAAATATTACATGATAGCCTTGAGTCTGAATTGAGAGGCAGTGGTGGCCTTTCAAATATTACGAAAGTGCTGTCTGCAAGTTATAATGATTTACCTTTCCATCTCAAGTATTGTTTCTTGTACATGAGCATCTTTCCTGAGACTAGCCCAGTTAAGCGAAGAAGGCTAATTCGGCTATGGATAGCTGAAGGGTTTGTAATAGAGAAAGGAGGCAAGACATCTGAAGAGGTTGGGGAAGAGTATCTGAATGAGCTGATTGACAGGAGTCTGATAAAGGTAAATGAAATGGATTTTGAAGGAAGGCCAAAAAGTGTGGGAGTTCATAGTCTGATGCTGAAGATGATTCTCTCAGTCTCACGAGAGGAGAACTTTTGTTCTGTTTGTACAGGATCAGAAAGGAACTTGAGTGAGAAAACCCGGCGCCTATCTATTCAGAAGGAAGATTTTGATGTGTCTCAGGACTTACCCTGTGTTCGAACCTTCTTCAGTTTCGGTATAGGCAAAGTAAAGATTGGTTCCAACTTCAAACTATTGAAGGTCTTGGACATACAGGGCACTCCTTTGGAAGAATTTCCGGGTGTAATTAAAGATCTTCTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATTCCAGGGACCCTGGGTGACCTTCATCACCTTGAGACCTTGGATCTTAAGCAGACTCTGGTAACAAAAGTACCCAAAGCAGTCCTACAACTTGAGAAACTTCGCCATTTGCTGGTTTATCGCACCAAAGAGGATCGGCGCATTGAAGAACCTACAAAAGCTGTCATTTGTAAAGGTGAGTGGGCAGCACAGAATGAGTCGGGAGCACAGAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTAGCAAAAGAACGTGGGGCGAGCTTGTGCCTCTCAATTGA | 4731 | 0.4388 | MADGAVSFLLQNLEAFATREWNLQEHIRNGVHNLKRELRSIEALMRDADAKKEHDHQFKVWIQEVRTEAYAIEDVLDLFRLHRDQESVWSHLKMRHSIGNLIQDINTRLVIIKQTKERYQIMVSTSISAETNAYLNVRVAPLIIGRGDNILGIDEPKRKLVSWALESNQKLKVMFVVGMAGLGKTTLARSVYEMVKEHFDCHAWIIASKSKTKPETLRSLLEHLGCSTEGSNIVILMHRLQNFLQPKRYVIVVDDLWVKDVWESIRLALPDGNNNRIIITTRRGDIANSCRDDDSIDIHKVQPLSPQWAEQLFYKKAFSRNGRCPSGLEEVSKSILQKCDGLPLGIIEIGKLLWGKRQSTYEWKKLDDSLESELRSGGGLSDIMRVLSASYNDLPYHLKYCFLYMSIFPENNPVKRRRLIRLWIAEGFVTEERGKTLEEVGEEYLNELIGRSLIKANEMDFDERPITVGVHSLMHRIILSVSQVENFCTVCAGPEGNLADKPRRLSIQTGNFDVSQDLTCVRTFFSFSTGRVNIGSNFKLLKVLDIQSTPLENFPSAITDLLLLRYLSLRNTNIRSIPKSLRNLRHLETLDLKQTLVKELPKAVLQLDKLRHLLVYAYNMGSVVEFDAVQGFTVPRKIGAMKNLQKLSFVKAKRHNRMIQELKNLTKLRKLGIVELAKEDGNSLCHSIEKMPDLLSLDVTSLSKGEPLELDAMTNPPRLLQRLYLKGHLQRFPKWVSSLHDLVRIRLKWSLLSQDNPIEALQDLPNLMELQLLDAYTGTQLDFNSGKFQKLKILDLEQLKQLRFIIMEDDTLPCLQKLIIRQCNELEHVPVGIDGLHHLNELHLCDMPEKFVALLKKRGGELRHLLHRILRILSYQQGHNLPISEKREREIMVDPEITGGIAASTLSFLLVKLDAFAIREWKLQENIKKSVQNLGCELRNIQAMLRDADSKEEHSHQFTVWIKEVRDQAYAIEDALDLFKLKQESVWRRLKLRHSINDLIQDIERSLQNIQRTKERYRSMASYSTNAGNNTYLHVRVAPLFIGNVDTVGIEEPTNKLVSWALEPKQRLEVMFVVGMAGLGKTTLVHSVYESVKQNFDCHIWITASKSKTKLDILRTLLVEKFGCTITQGGDVVALTHKLRKFLHNKRYVIVLDDLWVKDVWESIRLALPNGKDSRIIITTRRGDIANSWRDDDSVDIHMLQPLSPERAEKLFYKKAFSRNGRCPSGLEEVSKSILQKCDGLPLGIIEIGRLLSIKAPTKNEWKILHDSLESELRGSGGLSNITKVLSASYNDLPFHLKYCFLYMSIFPETSPVKRRRLIRLWIAEGFVIEKGGKTSEEVGEEYLNELIDRSLIKVNEMDFEGRPKSVGVHSLMLKMILSVSREENFCSVCTGSERNLSEKTRRLSIQKEDFDVSQDLPCVRTFFSFGIGKVKIGSNFKLLKVLDIQGTPLEEFPGVIKDLLLLRYLSLRNTNIRSIPGTLGDLHHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYRTKEDRRIEEPTKAVICKGEWAAQNESGAQNDTRARQSYAVEEAGHCRTSKRTWGELVPLN* | 1577 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0086 | 1576 | PANTHER | DISEASE RESISTANCE PROTEIN RP | 31 | 824 | IPR044974 | GO:0006952 | |
| Vvi1g0086 | 1576 | FunFam | Probable disease resistance protein At1g63360 | 1290 | 1379 | - | - | |
| Vvi1g0086 | 1576 | SMART | LRR_typ_2 | 1460 | 1482 | IPR003591 | - | |
| Vvi1g0086 | 1576 | SMART | LRR_typ_2 | 584 | 607 | IPR003591 | - | |
| Vvi1g0086 | 1576 | SMART | LRR_typ_2 | 1483 | 1506 | IPR003591 | - | |
| Vvi1g0086 | 1576 | SMART | LRR_typ_2 | 561 | 583 | IPR003591 | - | |
| Vvi1g0086 | 1576 | Coils | Coil | 996 | 1020 | - | - | |
| Vvi1g0086 | 1576 | Gene3D | Ribonuclease Inhibitor | 531 | 623 | IPR032675 | - | |
| Vvi1g0086 | 1576 | Gene3D | Ribonuclease Inhibitor | 624 | 858 | IPR032675 | - | |
| Vvi1g0086 | 1576 | Gene3D | Ribonuclease Inhibitor | 1431 | 1534 | IPR032675 | - | |
| Vvi1g0086 | 1576 | SUPERFAMILY | L domain-like | 512 | 851 | - | - | |
| Vvi1g0086 | 1576 | CDD | RX-CC_like | 902 | 1010 | IPR038005 | - | |
| Vvi1g0086 | 1576 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 135 | 404 | IPR027417 | - | |
| Vvi1g0086 | 1576 | FunFam | Probable disease resistance protein At1g63360 | 391 | 480 | - | - | |
| Vvi1g0086 | 1576 | Pfam | Rx N-terminal domain | 906 | 984 | IPR041118 | - | |
| Vvi1g0086 | 1576 | Pfam | Rx N-terminal domain | 5 | 90 | IPR041118 | - | |
| Vvi1g0086 | 1576 | CDD | RX-CC_like | 2 | 109 | IPR038005 | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 304 | 390 | IPR042197 | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 1203 | 1289 | IPR042197 | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 905 | 1016 | - | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 4 | 121 | - | - | |
| Vvi1g0086 | 1576 | SUPERFAMILY | L domain-like | 1360 | 1516 | - | - | |
| Vvi1g0086 | 1576 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1039 | 1303 | IPR027417 | - | |
| Vvi1g0086 | 1576 | Coils | Coil | 31 | 51 | - | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 391 | 480 | IPR036388 | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 1290 | 1379 | IPR036388 | - | |
| Vvi1g0086 | 1576 | Pfam | NB-ARC domain | 157 | 392 | IPR002182 | GO:0043531 | |
| Vvi1g0086 | 1576 | Pfam | NB-ARC domain | 1053 | 1291 | IPR002182 | GO:0043531 | |
| Vvi1g0086 | 1576 | Gene3D | - | 138 | 299 | IPR027417 | - | |
| Vvi1g0086 | 1576 | Gene3D | - | 1040 | 1197 | IPR027417 | - | |
| Vvi1g0086 | 1576 | PRINTS | Disease resistance protein signature | 339 | 353 | - | - | |
| Vvi1g0086 | 1576 | PRINTS | Disease resistance protein signature | 786 | 802 | - | - | |
| Vvi1g0086 | 1576 | PRINTS | Disease resistance protein signature | 243 | 257 | - | - | |
| Vvi1g0086 | 1576 | PRINTS | Disease resistance protein signature | 173 | 188 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0086 | Vvi-Chr1 | 872585 | 888273 | Dispersed/Tandem |