Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0085 ATGACTCAAGAATCAGCCCGGCGCCGCTGGAAAATGAGACACTCCATCAACGACTTGATAGAGAAGATTAACAGGAGTCTGGAAAACAGTCAGAAGATACAGGAGAGGTATCAGAAGCTGGTCTCCACTCCAACCAATGCTGTCAACAACACATATCCTCATGAGAAACTAGCTTCTTTGTTCCTTGGCAACGTTGACACTGTGGGCATGGAGGAGCCCCGAAATAAGCTCGTTTCTTGGGTGTTGGAGCCGAAGCAGAGACTTAAGATGATGTTCGTGGTGGGGATGGCTGGATTGGGGAAGACGACTCTCGTCCACAGCGTGTATGAGAGGGTGAAGCAGCGCTTTGATTCCCATGTCTGGATCACTGCTTCAGAGTCCAAAACCAAACTCGAAATCTTATTGAGCTTGTTAGCAAAGAAATTTGGCTGTTCAATTACACCGGGGGCAGACATGGTTGCTGTAACTCACGAACTGCAAAAATTTCTCCGCAACAAACGGTATGTTATGGTTATTGATGATTTTTGTGTAAAAGATGTGTGGGAATCCATTAGACTTGCATTACCAGATGGTAACAACAGTAGAATAATTATCACTACAAGGAGAGGCGACATAGCTAATTCTTGCAGAGATGATGATTCTATTCATATCCACAAGCTCCAGCCACTGTCTTGGGAAAATGCTAAGCGGCTCTTCCATACTAAAGCTTTCTCAAGAAATAGCAGATGTCCTTCAGGCTTGGAGGAACTGTCCCAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAGATTGGCAGACTCTTGAAGAGTAAGGCTCAAACTGCATATGAGTGGCAAAAGTTACACGATAACCTTGAATCTGAATTGAGAAGCGGTGGTGGCCTTTCCAATATGATGAAAGTGCTGTCTACAAGTTACAAAGATTTACCTTACCATCTCAAGTGTTGTTTCTTGTACATGGGCATCTTTCCTGAAAATAAACCAGTTAAGCGAAGAAGACTGGTTCGGCTGTGGATAGCTGAGAGATTTGTAACAGAGGAGAGAGGCAAAACTCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAGTCTGATACAGGCAAATGAAATGGATTTTGATGGAAGGCCCAAAAGTGTAGGAGTTCATTGTCTCATGCATAAGATGATTCTCTCACTCTCACATGAGGAGAACTTTTGTACTCTACATTGTACAGGAGCAAAAAAGAACTTTACTGAGAAAACCCGGCGCCTATCTATCCAGAAGAAAGACTTTGATATTTCTCAGGAGTTGCCCCGTCTTCGAACCTTCTTCAGTTTCAGTACAGGTAGGGTAAACATTCGTTGGATTAATTTCCTACGACTGAGGGTTTTGGATATACAGGGCACTTCATTGGGAGCCTTCCCGAGTGTAACAACAGATCTTCTCCTCTTGAGGTACTTGAGTTTGAGGAATACAGATATAAGAAGCATCCCCGAAACCGTGAGTAACCTAAAGCAGCTTGAGACCTTGGATCTCAAGCAAACTCGGGTGAAAAAGCTACCCAAATCAGTCCTACAACTTGGGGAACTTCGCCATTTGCTGGTTTGTCGCTACAATAATGGACGTGTTGTCTCTTTTGATGCTGTTCAGGGGTTCAAGGTTCCAAAAAAGATCAGTGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGATGGCAGTACAGAATGATAGAGGAGCTCCAACATTTGACACAGTTGAGGAAGCTGGGCATTGTAGCACTAGAAAAAGAAGATGGAAAGAGCTTGTGCGACTCAATTGAAAAGATGCGAAATCTCCATTCCTTGAATGTGACTTCCCTTAATCAGGAGGAGCCTCTGCAGCTTGATGCAATGACTAATCCTCCGCCCTTTCTGCAACGCTTGCATCTCAAAGGGCCCCTACCAAGGTTTCCAAAGTGGGTATCTTCTCTACATGACCTGGCGAGAATACGCCTAAATTGGTCTTCGCTGTCAGAAGATAACCCGGTTGAAGCTCTTCAAGATCTCCCAAATCTGATGGAGCTGCAGTTGCTTGATGCATACACTGGAACCCAGTTGGAGTTTCACAAGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGTGCAATTGAAACTGAGGTTTATCAGAATGGAAGATGGAACATTGCCCTGCCTGCAAAAGCTGATAATAAGGAAATGCAGCGAGCTGGAGCGGGTCCCTGTTGGTATCGACGACCTCATTCATCTCCAAGAGCTGCTCCTCTGCGATATGCCTGAGAAATTCGTGACCCAGCTGAAGAAAAAAGGCGGTGAACTTCGCCATCTCCTTCACCGTATTTCACATATTGGTTCATACAAAGAGGGCAAGTTGGTGGAAGATCTTTCATGA 2418 0.4425 MTQESARRRWKMRHSINDLIEKINRSLENSQKIQERYQKLVSTPTNAVNNTYPHEKLASLFLGNVDTVGMEEPRNKLVSWVLEPKQRLKMMFVVGMAGLGKTTLVHSVYERVKQRFDSHVWITASESKTKLEILLSLLAKKFGCSITPGADMVAVTHELQKFLRNKRYVMVIDDFCVKDVWESIRLALPDGNNSRIIITTRRGDIANSCRDDDSIHIHKLQPLSWENAKRLFHTKAFSRNSRCPSGLEELSQSILQKCDGLPLGIIEIGRLLKSKAQTAYEWQKLHDNLESELRSGGGLSNMMKVLSTSYKDLPYHLKCCFLYMGIFPENKPVKRRRLVRLWIAERFVTEERGKTLEEVGEEYLNELIDRSLIQANEMDFDGRPKSVGVHCLMHKMILSLSHEENFCTLHCTGAKKNFTEKTRRLSIQKKDFDISQELPRLRTFFSFSTGRVNIRWINFLRLRVLDIQGTSLGAFPSVTTDLLLLRYLSLRNTDIRSIPETVSNLKQLETLDLKQTRVKKLPKSVLQLGELRHLLVCRYNNGRVVSFDAVQGFKVPKKISALKNLQKLSFVKARWQYRMIEELQHLTQLRKLGIVALEKEDGKSLCDSIEKMRNLHSLNVTSLNQEEPLQLDAMTNPPPFLQRLHLKGPLPRFPKWVSSLHDLARIRLNWSSLSEDNPVEALQDLPNLMELQLLDAYTGTQLEFHKGKFQKLKILDLVQLKLRFIRMEDGTLPCLQKLIIRKCSELERVPVGIDDLIHLQELLLCDMPEKFVTQLKKKGGELRHLLHRISHIGSYKEGKLVEDLS* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0085 805 FunFam Probable disease resistance protein At1g63360 310 399 - -
Vvi1g0085 805 Pfam NB-ARC domain 73 311 IPR002182 GO:0043531
Vvi1g0085 805 PANTHER DISEASE RESISTANCE PROTEIN RP 12 744 IPR044974 GO:0006952
Vvi1g0085 805 PRINTS Disease resistance protein signature 162 176 - -
Vvi1g0085 805 PRINTS Disease resistance protein signature 90 105 - -
Vvi1g0085 805 PRINTS Disease resistance protein signature 258 272 - -
Vvi1g0085 805 PRINTS Disease resistance protein signature 503 519 - -
Vvi1g0085 805 Gene3D - 223 309 IPR042197 -
Vvi1g0085 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 323 IPR027417 -
Vvi1g0085 805 Gene3D - 57 218 IPR027417 -
Vvi1g0085 805 Gene3D Ribonuclease Inhibitor 435 793 IPR032675 -
Vvi1g0085 805 Coils Coil 16 36 - -
Vvi1g0085 805 Gene3D - 310 399 IPR036388 -
Vvi1g0085 805 SUPERFAMILY L domain-like 389 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0085 Vvi-Chr1 865285 867702 Tandem