Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0084 ATGAAAGTCCAAGATATAGGACGAGAGCTGGGGAGCATTGAGGCCCTCCTACAAGCTGATTCAAAGGAAGATCCTGATCACCAATACGCAGTCTGGATTCAACAGGTCCGTGATCAAGCTAATGCCATCGAGGATGTTCTTGACCGGGTAAGGCTCGCTGAAGGTTCAGTGTGGTGGGGCTTGAAAATGCGTTACTCCACCGAAGAGTTGATACAGGAGATTAACACGAGTCTGCAAAACATTCAGCGGACAAGGGAGAGGTATCACAGCATGCGCTCCACTTCAACCCATACTGGCTACAGCACATACTTTCCTGTGAGAGCGGCTCCTTTGTTCACTGGCGATGTTGACACTGTGGGCATTGAGGAGCCTAGAAATCAGCTGGTTTCTTGGGCCTTGGAACCGAGGCAGAGGCTTGAGGTGATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACCACTCTTGTCAACAGTGTGTATGAGAGGGTGAAGCAGCACTTTGATTGCCATGTCTGGATCACTGCTTCAAAGTCCAAAAACAAACTCGATGTCTTATGCACCTTGTTAGTAGAGGGATTTGGGTGTTCAATTACACAGAGGGCCGACAAGGTTGCTCAGGCGCGTAACCTGCGGAAATTTCTCCACAACAAACGGTATGTTATAGTTGTTGATGATTTATGGGAAAAAAATGTGTGGGAGTCCATTAAACTTGTATTGCCAGATGATGGTAACAACAGTAGAATAATTATCACTACAAGGAGAGGCGACATAGCTAATTCTTGCAGAGATGATGATTCTATTCATATCCACAAGCTCCAGCCACTGTCCTGGGAAAATGCTAAGCAGCTCTTCCATACTAAAGCTTTCTCAAAAAACGGCGGATGTCCTTCAGGCTTGGAGGAAATTTCCAAATCCATCTTACACAAATGCGATGGATTGCCACTTGGGATTATTGAGATCGGCAAACTGTTGTCAAGAAAGGCTCAAACTGCATATGAGTGGGACAAGTTACACAATAGCCTTGAATCTGAATTGAGAAGCAGTGGTGGCCTTTCAAATATGATGAGTGCGCTGTCCGCAAGTTACGAGGATTTGCCTTACCATCTCAAGTATTGCTTCTTATACTTGAGCATGTTTCCCGAGAATAAACCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAAGAGAGGAGAGAGGCAAAACTCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAATATGTTGAAGGCAAATGAAATGGATTTTGATGGAAGGCCAAAAAGTATGGGAGTTCATAGTCTCATGCATAAGATGATTCTCCTTGTCTCACATGAGGATAACTTTTGTTCTGTTTGCACAGGAGCAGAAGGGAACTTGACTGAGAAAACCCGGCGCCTATCCATCCAGAAGGAAGGCTTTGATGTGCCTCAGGATGAGCCCTTGCCCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTATGGTAAACATTGGTTCGAATTTCGAGCTATTAATGGTTTTGGACATGGAAGGCACTCCTTTGGTAAACTTTCCAAGTGCCATTACAGATCTTGTGCTATTGAGGTATTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCTGGTCCCTGAGTAAACTACGGCACCTTGAGACCTTGGATCTTAAGCAGACGCTGGTAACAAAGGTACCCAAAACAGTCCTAAAACTTAAGAAACTTCGCCACTTGCTGGTTTATCGCTACAATATGGAAAGTGTCCTACCTTTTGATATTGTTCAGGGGTTCAAGGCACCAAAGAGGATCGGCGCATTGAAGAACCTACAAAAGCTTTCATTTGTAAAGGCAAGTGGGCAGCACAGAATGAGTCGGGAGCACAAAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTAGGCATTGTAGAACTAGCAAAAGAACATGGGGCAAGCTTGTGCAACTCAATTGGGAAGATGCGAAATCTCCATTCCTTGAATGTGACATCCCTTGATAAGGAGGAGCCTCTGGAGCTGGATGCAATGGATCCGCCGCGTCTTCTTCAACGCCTCTATCTCAAAGGGCCCTTGCAAAGGTTTCCAAGGTGGGTTTCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCTTCACTCACAGAAGACAACCCAATTGCAGCCCTTGAAGATCTCCCAAACTTGATGGAGCTGCAGTTACTTGATGCATACACTGGAGACCAGTTCGATTTCAACAAGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGAGAGATTGGAACGACTGAAGTTTATCATAATGGAAGATGGCACATTGCCTTGCCTACAAAAGCTGATCATAAGGCATTGCAAGGAGCTGAAGCAGGTTCCCATAGGTATTGACAACCTCAATCATCTCAATGAACTGTTTCTCTGCGATATGCCTGAGAAATTCGTGGCCCAGCTAAGGAAAAAAGTCGGTGAACTTCGCCATCTGCTTCATCGTATTTCGTATATTCGTACTTTCAGTTCGGATAAGGAGTGA 2577 0.4505 MKVQDIGRELGSIEALLQADSKEDPDHQYAVWIQQVRDQANAIEDVLDRVRLAEGSVWWGLKMRYSTEELIQEINTSLQNIQRTRERYHSMRSTSTHTGYSTYFPVRAAPLFTGDVDTVGIEEPRNQLVSWALEPRQRLEVMFVVGMAGLGKTTLVNSVYERVKQHFDCHVWITASKSKNKLDVLCTLLVEGFGCSITQRADKVAQARNLRKFLHNKRYVIVVDDLWEKNVWESIKLVLPDDGNNSRIIITTRRGDIANSCRDDDSIHIHKLQPLSWENAKQLFHTKAFSKNGGCPSGLEEISKSILHKCDGLPLGIIEIGKLLSRKAQTAYEWDKLHNSLESELRSSGGLSNMMSALSASYEDLPYHLKYCFLYLSMFPENKPVKRRRLIRLWIAEGFVREERGKTLEEVGEEYLNELIDRNMLKANEMDFDGRPKSMGVHSLMHKMILLVSHEDNFCSVCTGAEGNLTEKTRRLSIQKEGFDVPQDEPLPCVRTFFSFSTGMVNIGSNFELLMVLDMEGTPLVNFPSAITDLVLLRYLSLRNTNIRSIPWSLSKLRHLETLDLKQTLVTKVPKTVLKLKKLRHLLVYRYNMESVLPFDIVQGFKAPKRIGALKNLQKLSFVKASGQHRMSREHKMIQGLDNLTQLRKLGIVELAKEHGASLCNSIGKMRNLHSLNVTSLDKEEPLELDAMDPPRLLQRLYLKGPLQRFPRWVSSLHDLVRIRLKWSSLTEDNPIAALEDLPNLMELQLLDAYTGDQFDFNKGKFQKLKILDLERLERLKFIIMEDGTLPCLQKLIIRHCKELKQVPIGIDNLNHLNELFLCDMPEKFVAQLRKKVGELRHLLHRISYIRTFSSDKE* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0084 858 Coils Coil 33 53 - -
Vvi1g0084 858 Gene3D - 275 366 IPR042197 -
Vvi1g0084 858 Pfam Rx N-terminal domain 2 52 IPR041118 -
Vvi1g0084 858 PRINTS Disease resistance protein signature 310 324 - -
Vvi1g0084 858 PRINTS Disease resistance protein signature 141 156 - -
Vvi1g0084 858 PRINTS Disease resistance protein signature 213 227 - -
Vvi1g0084 858 PRINTS Disease resistance protein signature 764 780 - -
Vvi1g0084 858 FunFam Probable disease resistance protein At1g61300 105 266 - -
Vvi1g0084 858 Coils Coil 67 87 - -
Vvi1g0084 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 376 IPR027417 -
Vvi1g0084 858 Gene3D - 368 450 IPR036388 -
Vvi1g0084 858 Pfam NB-ARC domain 136 364 IPR002182 GO:0043531
Vvi1g0084 858 Gene3D Ribonuclease Inhibitor 493 603 IPR032675 -
Vvi1g0084 858 FunFam Probable disease resistance protein At1g63360 362 451 - -
Vvi1g0084 858 Gene3D Ribonuclease Inhibitor 607 840 IPR032675 -
Vvi1g0084 858 Gene3D - 1 87 - -
Vvi1g0084 858 Gene3D - 110 270 IPR027417 -
Vvi1g0084 858 SUPERFAMILY L domain-like 442 829 - -
Vvi1g0084 858 PANTHER DISEASE RESISTANCE PROTEIN RP 10 802 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0084 Vvi-Chr1 850780 857788 Tandem