Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0083 ATGGCAGTCCAAAATTTAGGACGCGAGCTGCGGAGCATTGAAGCCCTACTGAGAGATGCTGCTTCAAAGAAAGAGCATGATCACCAATTCACAGTCTGGATTCAAAATGTCCGTGATCAAGCTTATGCCATTGAGGATGTTCTTGACCTGTTCAGGCTCGATCAAGAATCAGTGTGGCGCCGCTTGAAAATGCGTCACTCCATCAACAACTTGATACAGGATATTGACTGGAGTCTCCAAAATATTCAGCGGACAAAGGAGAGGTATCGCAGCATGGCCTCCTATTCAACCAATGCTGGCAACAACACATACCTTCATGTGAGAATGGCTCCTTTGTTCATTGGTAATGTTGATACCGTGGGCATTGAGGAGCCTACAAATAAGCTGGTTTCTTGGGCCTTGGAACCGAAACAGAGGCTTGAGGTGATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACAACTCTTGTCCACAGCGTGTATGAGAGGGTGAAGCAGAACTTTGATTGCCATGTCTGGACCACAGCCTCAAAGTCCAAAACCAAACTCGATATCTTATGGACCTTGTTAGTAGAGGAATTGGGCTGTACAATCACACAGGGGGCCGATGTGGTTGCTCTGACGCATAAGCTGCGAAAATTTCTCAACAACAAACGGTATGTCATAGTTCTTGATGACTTATGGGTAAAAGATGTGTGGGAGTCCATTAGACTAGCCTTGCCAAATGGTAAGGACAGTAGAATAATTATCACTACAAGGAGAGGCGATATAGCTAATTCTTGTAGAGATGATGATTCTATTGATATCCACAAGCTTCAGCCACTGTCACCGCAAAGGGCTGAGCAACTCTTCTATAAGAAAGCTTTCTCAAGAAATGGCAGATGTCCTTCAGGTTTGGAGGAAGTCTCCAAATCCATTTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGACTTTTGTCCATTAAGGCTCCAACTAAAAATGAGTGGAAAATATTACATGATAGCCTTGAGTCTGAATTGAGAAGCAGTGGTGAGCTTTCAAATATTATGAAAGTGTTGTCTGCAAGTTACAATGATTTACCTTACCATCTCAAGTATTGTTTCTTGTACATGAGCATCTTTCCTGAGAGCAACCCAGTTAAGCGAAGAAGACTTATTCGGCTATGGATAGCTGAAGGGTTTGTGATAGAGAAAAGAGGCAAAACGCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAATCTGATAAAGGCAAATGAAATGGATTTTGATGGAAGGCCGACAAGTGTGGGAGTTCATAGTCTCATGTTGAAGATGATTCTCTCAGTCTCACATGAGGAGAACTTTTGTACTGTCCGTACAGGGGCAGTAAGAAAGTTGACTGAGAATACCCGCCGCCTATCTATCCAGAAGGAAGATTTTGATGTGTCTCAGGACTTACCCTGTGTTCGAACCTTCTTCAGTTTCTGCATAGGCAAAGTAAGGATTGGTTCCAATTTCAAACTATTGAAGGTCTTGGACATACAGGGCACTCCTTTGGAAGAATTTCCGAGTGTAATTACAGATCTTCTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGAATCCCTCGGTCCCTCGGTGACCTTCATCACCTTGAGACCTTGGATCTTAAGCAGACTCTGGTAACAAAGGTACCTAAAGAAGTCCTACAATTGGAGAAACTTCGCCATCTGCTGGTTTATCGCTACAATATGGAAAGTGTCCTACCTTTTGATATTGTTCAGGGGTTCAAGGCACCAAAGAGGATGGGCGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGTGGGCAGCACAGAATGAGTCGGCAGCACAGTATGATACAAGGGCTCGAAAGTCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTGGCAAAAGAAGATGGGACGAGCTTGTGCCACGCAATTGTGAAGATGCGAAATCTCCATTCCTTGAATGTGACATCTCTTAATATAGAGGTGTCTCTAGAGCTTGATGCAATGACCAATCCGCCGCCCCTTCTTCAACGCTTGTACCTCAAAGGGCCTTTGGAAAGGTTTCCAAAGTGGGTATCTTCTCTACATGACCTGGTGAGAATTCGCCTAAAATGGTCTTCACTCGCAGAAGACCCGATTGCAGCTCTTCAAAACCTCCCATATCTCGTGGAGCTGCAGCTGCTTGATGCATACACTGGAACCCAGTTGGACTTCAGGTCGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTCAGCAATTGGAACAGCTGAAGTCTATCATAATGGAAGAAGGCACATTGCCTTGCCTACAAAAGCTGATCATAAGCCACTGTAGCAAGCTGGTGCAGGTCCCTACAGGTATTGACAAGCTCATTCACCTCCAAATGCTGCTGCTGCACGATATGCCCGAACCATTTGTGATCAGGCTGAGGAAAAATGGCGGTCGATTGCGCCGTTTGGTTCACCACATTCCGTGCCTACACGAAGTTGATGAATCCAACGCCTTAGACTTGGAACCTAAACTCAGCCAATCTCCGCCACATGAATTTTAA 2616 0.4465 MAVQNLGRELRSIEALLRDAASKKEHDHQFTVWIQNVRDQAYAIEDVLDLFRLDQESVWRRLKMRHSINNLIQDIDWSLQNIQRTKERYRSMASYSTNAGNNTYLHVRMAPLFIGNVDTVGIEEPTNKLVSWALEPKQRLEVMFVVGMAGLGKTTLVHSVYERVKQNFDCHVWTTASKSKTKLDILWTLLVEELGCTITQGADVVALTHKLRKFLNNKRYVIVLDDLWVKDVWESIRLALPNGKDSRIIITTRRGDIANSCRDDDSIDIHKLQPLSPQRAEQLFYKKAFSRNGRCPSGLEEVSKSILQKCDGLPLGIIEIGRLLSIKAPTKNEWKILHDSLESELRSSGELSNIMKVLSASYNDLPYHLKYCFLYMSIFPESNPVKRRRLIRLWIAEGFVIEKRGKTLEEVGEEYLNELIDRNLIKANEMDFDGRPTSVGVHSLMLKMILSVSHEENFCTVRTGAVRKLTENTRRLSIQKEDFDVSQDLPCVRTFFSFCIGKVRIGSNFKLLKVLDIQGTPLEEFPSVITDLLLLRYLSLRNTNIRRIPRSLGDLHHLETLDLKQTLVTKVPKEVLQLEKLRHLLVYRYNMESVLPFDIVQGFKAPKRMGALKNLQKLSFVKASGQHRMSRQHSMIQGLESLTQLRKLGIVELAKEDGTSLCHAIVKMRNLHSLNVTSLNIEVSLELDAMTNPPPLLQRLYLKGPLERFPKWVSSLHDLVRIRLKWSSLAEDPIAALQNLPYLVELQLLDAYTGTQLDFRSGKFQKLKILDLQQLEQLKSIIMEEGTLPCLQKLIISHCSKLVQVPTGIDKLIHLQMLLLHDMPEPFVIRLRKNGGRLRRLVHHIPCLHEVDESNALDLEPKLSQSPPHEF* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0083 871 Gene3D - 275 361 IPR042197 -
Vvi1g0083 871 Pfam NB-ARC domain 125 364 IPR002182 GO:0043531
Vvi1g0083 871 Pfam Rx N-terminal domain 3 56 IPR041118 -
Vvi1g0083 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 375 IPR027417 -
Vvi1g0083 871 FunFam Probable disease resistance protein At1g63360 362 451 - -
Vvi1g0083 871 SUPERFAMILY L domain-like 441 827 - -
Vvi1g0083 871 PRINTS Disease resistance protein signature 142 157 - -
Vvi1g0083 871 PRINTS Disease resistance protein signature 310 324 - -
Vvi1g0083 871 PRINTS Disease resistance protein signature 762 778 - -
Vvi1g0083 871 PRINTS Disease resistance protein signature 214 228 - -
Vvi1g0083 871 Gene3D - 362 451 IPR036388 -
Vvi1g0083 871 Coils Coil 3 23 - -
Vvi1g0083 871 PANTHER DISEASE RESISTANCE PROTEIN RP 5 799 IPR044974 GO:0006952
Vvi1g0083 871 Gene3D - 112 270 IPR027417 -
Vvi1g0083 871 Gene3D Ribonuclease Inhibitor 474 860 IPR032675 -
Vvi1g0083 871 Gene3D - 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0083 Vvi-Chr1 812008 816090 Tandem