Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0079 ATGCCCGTAACTCCCTCACGCCTTCTGAAACCCATAAACCTTCCAGTTTCTTCGCTAATCAGAAGCTTTAATTCATGGTCTTCACCTTCAGCCTCCATAAGAAACGCTTCTTCTTCTTCTTCTCCTTACAAAGTCTTACAAGTGTACTCTCAGCTCCACCGCCAATCTCGACCTTTTGACAGCTTCTCCATACTCTTCACCATCAAGTCCTGCGCCCATTTGCGGAACCTCCCACTCTTTGGACACCTCCACGCCCATCTTCTCAAACTGGGCTTCAATTCCCATGTCTACGTCGCCACTTGTCTTCTCCATACGTATTCTCTCGCTTCGTTGCATGACGCCTGTGTCCTGTTCGATGAAATGCCTCATAAAAACACCGTTACCTGGAACACCATGATCACGGCCTATTCGAAATCTGGGGACGTTAAGAAGGCGCGTCTCGTGTTTGAGCAAATGCCCTTGAGGGACCTCGCTTCGTGGTCTGCCATGGTCGCTGGGTACATGTATGGTGGCGAGTGGCATAGTGGGTTGGCGCTTTTTCGAGAGATGGTGGTGAATGAGGGGCTGAGACCTGATAAAGTGACACTGGGGTCGGTTTTATCGGGCTGCGCCCGGATGGGTTCGCTTGGGTTGTTGGTGGGGAGGTCAATTCATGGTTTCACGGCGAAGAATGGGTGGGAGTTGAGTGTGGACCTTGGTACGGTTTTGGTGGACATGTACGCCAAGTGTGGATTTCTTAAGAGTGCTTTCCGGGTTTTTGATTTGATGCAGGAAAAGAATGTGGCGTCTTGGACTGCATTGATTTGTGGTTCTGCTCAACATGGATATGGGAAAGAAGCCTTGTCCATGTTTGAGCTGATGCAAGATATGGGCGTGAAACCCAATGAGATGACTTTCACCGGGATTCTCAGTGCTTGTGCACAAGCAGGATTAGTTGAGGAAGGCCGCAAGTATTTCAACAAGATTGAGGAGTATGGGTTGGAGCCAAGAATTCAACATTTTGGCTGCATGGTTGATTTGTTTGGTAAGGCAGGGCTTTTAGAGGAAGCTTATGAAATTATTAATTCAATGAAACTTGAGCCCAATGTTGTTTTGTGGAGCTCATTTTTGTCATCTTGTAAAGTGCACAAGCAGTTTGAGCTGGCAGAGAGAGTGACTGAGCAGGTTTTAAGGACAGTAAAGCCGGAGAACGATGGAGGGGTTTATACCCTTATTTCCAATTTATTTGTTCTGAATGATAAGTGGGATGATGCAGAGAGAGTGAGGAAATTAATGGTCAATCAAAAAGTGAGGAAGGCAAGAGGATCTAGTTTCATCAGAAGTGGATCTGTCTAG 1335 0.4704 MPVTPSRLLKPINLPVSSLIRSFNSWSSPSASIRNASSSSSPYKVLQVYSQLHRQSRPFDSFSILFTIKSCAHLRNLPLFGHLHAHLLKLGFNSHVYVATCLLHTYSLASLHDACVLFDEMPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALFREMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSACAQAGLVEEGRKYFNKIEEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKWDDAERVRKLMVNQKVRKARGSSFIRSGSV* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0079 444 FunFam Pentatricopeptide repeat-containing protein, mitochondrial isoform A 41 223 - -
Vvi1g0079 444 Gene3D Tetratricopeptide repeat domain 233 444 IPR011990 GO:0005515
Vvi1g0079 444 Gene3D Tetratricopeptide repeat domain 30 214 IPR011990 GO:0005515
Vvi1g0079 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Vvi1g0079 444 FunFam Pentatricopeptide repeat-containing protein 259 443 - -
Vvi1g0079 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vvi1g0079 444 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 440 IPR046960 GO:0003723|GO:0009451
Vvi1g0079 444 Pfam PPR repeat 127 154 IPR002885 -
Vvi1g0079 444 Pfam PPR repeat 334 358 IPR002885 -
Vvi1g0079 444 Pfam PPR repeat 159 185 IPR002885 -
Vvi1g0079 444 Pfam PPR repeat family 259 307 IPR002885 -
Vvi1g0079 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vvi1g0079 444 Pfam E motif 376 439 IPR046848 -
Vvi1g0079 444 NCBIfam pentatricopeptide repeat 263 296 IPR002885 -
Vvi1g0079 444 NCBIfam pentatricopeptide repeat 159 192 IPR002885 -
Vvi1g0079 444 NCBIfam pentatricopeptide repeat 234 261 IPR002885 -
Vvi1g0079 444 NCBIfam pentatricopeptide repeat 127 154 IPR002885 -
Vvi1g0079 444 NCBIfam pentatricopeptide repeat 298 329 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0079 Vvi-Chr1 791377 792711 Wgd