Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0077 ATGAAACGTATCTCCCTCTTACACAGACACCTCCAATGGAGAAATCTCACCGTAACTGCCCTTCAACGGACTCCTGAAATTGATCGTACTATAGCTTCGATTCAGTCCATATCTTCAAACCCATGTTTTTCTCTTCTGGGTATCTGCAAAACCGTATCGTCTCTCAGGAAAATCCACGCTTTGCTCGTCGTCCACGGCCTGTCGGAGGACCTTTTATGCGAAACCAAATTGGTTAGCTTGTATGGTTCGTTTGGCCACGTTGAGTGTGCCCGATTAATGTTTGATAGAATTCGCAACCCGGATCTTTATTCGTGGAAGGTGATGATCAGATGGTATTTTTTGAACGATTCGTATTCGGAGATTGTTCAGTTTTACAACACCCGTTTGAGGAAATGCCTCAACGAGTATGACAATGTTGTTTTTTCGATTGTGTTGAAGGCGTGCAGTGAATTGCGTGAGACTGATGAAGGGAGGAAACTGCATTGCCAGATTGTTAAGGTGGGGAGTCCTGATAGTTTTGTGTTGACGGGTCTTGTGGATATGTATGCTAAATGTAGAGAGGTCGAGGATTCACGTCGAGTGTTTGATGAAATTCTTGATAGAAATGTGGTGTGTTGGACTTCCATGATTGTGGGGTATGTACAGAATGATTGCTTGAAAGAAGGGTTGGTGTTGTTTAATAGGATGAGGGAGGGGCTGGTGGAAGGTAACCAATATACTTTGGGGAGCTTAGTCACAGCCTGTACCAAGTTGGGAGCTTTACATCAGGGAAAGTGGGTTCATGGGTATGTGATTAAGAGTGGTTTTGATCTCAATTCTTTCTTGGTAACACCTCTTCTAGACTTGTATTTCAAGTGTGGGGACATTAGAGATGCTTTTTCTGTATTTGATGAGCTTTCTACTATTGATCTAGTTTCATGGACAGCCATGATTGTTGGGTATGCTCAGAGGGGCTACCCCCGAGAGGCTTTGAAGCTTTTTACAGATGAAAGATGGAAAGATCTCTTGCCAAATACTGTTACCACTTCGAGTGTGCTTTCTGCATGTGCACAAACTGGGTCTTTGAATATGGGTAGATCAGTTCATTGTCTTGGGATAAAACTTGGATCGGAAGATGCAACTTTTGAAAATGCTCTTGTGGACATGTATGCAAAATGCCACATGATTGGAGATGCTCGGTATGTATTCGAAACAGTTTTTGATAAGGATGTAATTGCTTGGAATTCAATCATTTCAGGGTACACTCAAAATGGGTATGCATATGAAGCCCTTGAACTTTTTGATCAAATGAGATCAGACTCTGTCTACCCAGATGCAATCACACTGGTCAGCGTCCTCTCAGCCTGTGCTTCTGTTGGTGCTTACAGAGTGGGTTCTTCTCTTCATGGATACGCTATAAAGGCTGGCCTATTATCAGGCAGTGTCTATGTTGGCACTGCACTTCTAAACTTCTACGCCAAATGTGGAGATGCAGAGTCTGCTCGAGTAATTTTTGATGAGATGGGAGAGAAGAACACGATCACATGGAGTGCAATGATTGGCGGTTATGGAATTCAAGGGGATTGTAGCAGGTCCCTTGAACTTTTTGGTGATATGCTGAAGGAAAAGTTGGAGCCCAATGAAGTAATCTTCACCACTATATTATCGGCTTGTAGCCATTCAGGGATGCTTGGAGAAGGGTGGAGGTATTTCAATACAATGTGTCAGGTCTATAACTTTGTGCCTTCCATGAAGCATTATGCATGTATGGTTGATCTCTTGGCTCGTGCAGGAAGGCTTGAAGAAGCCTTGGATTTCATTGAGAAAATCCCAATTCAACCGGATGTTAGTTTGTTGGGAGCTTTTCTCCATGGATGCAGACTCCACTCGAGGTTTGATCTTGGAGAGGTGGCAGTTAGGAGGATGCTAGAGTTGCACCCTGATAAAGCTTGTTACTATGTTCTCATGTCAAATTTGTATGCATCAGAAGGAAGATGGAGCCAGGCTAATCAGGTGATGGAGTTGATGAAACAAAGAGGATTAGCAAAATTACCTGGGTGGAGCCTAGTGGATATTGAGACCAGTAATGATTTTTCTCCATTGATAGTGGCATCTCATCCTTAG 2103 0.4313 MKRISLLHRHLQWRNLTVTALQRTPEIDRTIASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIETSNDFSPLIVASHP* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0077 700 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 259 357 - -
Vvi1g0077 700 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 32 161 - -
Vvi1g0077 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 44 458 IPR046960 GO:0003723|GO:0009451
Vvi1g0077 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Vvi1g0077 700 Gene3D Tetratricopeptide repeat domain 256 364 IPR011990 GO:0005515
Vvi1g0077 700 FunFam Pentatricopeptide repeat-containing protein 361 457 - -
Vvi1g0077 700 Pfam PPR repeat family 402 450 IPR002885 -
Vvi1g0077 700 Pfam PPR repeat family 504 551 IPR002885 -
Vvi1g0077 700 Gene3D Tetratricopeptide repeat domain 371 458 IPR011990 GO:0005515
Vvi1g0077 700 NCBIfam pentatricopeptide repeat 542 576 IPR002885 -
Vvi1g0077 700 NCBIfam pentatricopeptide repeat 204 231 IPR002885 -
Vvi1g0077 700 NCBIfam pentatricopeptide repeat 406 439 IPR002885 -
Vvi1g0077 700 NCBIfam pentatricopeptide repeat 507 541 IPR002885 -
Vvi1g0077 700 FunFam Pentatricopeptide repeat-containing protein mitochondrial 166 258 - -
Vvi1g0077 700 Pfam E motif 622 683 IPR046848 -
Vvi1g0077 700 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 479 688 - -
Vvi1g0077 700 Pfam PPR repeat 580 602 IPR002885 -
Vvi1g0077 700 Pfam PPR repeat 305 327 IPR002885 -
Vvi1g0077 700 Pfam PPR repeat 279 299 IPR002885 -
Vvi1g0077 700 Pfam PPR repeat 176 203 IPR002885 -
Vvi1g0077 700 Pfam PPR repeat 204 231 IPR002885 -
Vvi1g0077 700 Gene3D Tetratricopeptide repeat domain 115 255 IPR011990 GO:0005515
Vvi1g0077 700 Gene3D Tetratricopeptide repeat domain 479 649 IPR011990 GO:0005515
Vvi1g0077 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vvi1g0077 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Vvi1g0077 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0077 Vvi-Chr1 763715 765817 Tandem