Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0076 ATGATACTTTACATGCCCTTGTTCAGACGATGCGCCACCTCAACAACACTCACCCAACTCCATGCCCATCTCTTCATCACCGGCCTCCATAGACACCCACCTGCATCCACCAAACTCATTGAGTCCTATGCCCAAATTGGCATTTTTGAATCTTCCAAACGTGTCTTTGATACCTTCCCTAAACCCGATTCCTTCATGTGGGGTGTTCTGATCAAGTGCTATGTGTGGGGTGGATTCTTTGAAGAAGCCGTTTCACTTTACCATGAAATGGTGTACCAGGACCAGACCCAGATCAGTAACTTTGTGTTTCCATCAGTTTTGAAGGCGTGTTCCGGTTTTGGTGATCTGAGTGTTGGTGGGAAGGTTCATGGGAGAGTAATCAAATGTGGGTTTGAGTCTGATGCTGTTGTTGAGACCTCGTTGCTTTGTATGTATGGAGAAATGAGCTGTTTAGATGATGCTTGTAAGGCATTCGATACAATGCCAATAAGAGATGTGGTGGCATGGAGTTCCATTGTTCTGAACTTTGTTCAGAATGGACAAGCAAGTGAAGGGTTGGATATGTTTTCTCAGATGATCTCAGAAGCTAATGTTCCTTGTCGGATGACCGCTCCATGGACACCAATGATTTCCTGCTACAATCAAAGTGGATGTTTCCAAGAAGCCCTGAACGTTTTTGCTAAGATGCAGGAGTTTAAAATGGAACCCAATCAAGTAACCATGGTGGGTGTTCTGTGTGCTTGTGCTAGGTTGGGCAGGGTGAAGGAAGGGAGGTCAGTTCATGGCTTTGTCATCAGAAGAGCTATGGACCCAGAGTTAGATTTTCTGGGGCCAGCATTAATGGAGTTGTATGCTGATACTGGAAACTTAAGAGATTGCCATAAGGTTTTTGAAACTATTAAAGAGAAAACTATCCTCTCATGGAACACACTCATATCGATTTTCACCCGGAATGGGCAACCAGAGGAGGCCTTACTTCTCTTTAATGCCCTGATTGATATGTACGCCAAGTGTGGGTTTGTGCATTCAGCAAACAAGATGTTTGAGAAGATCAAGGAGAAGAGTCTGGTAACATGGAATTCTATGATTTGCGGTTTCTCTCAGAACGGTTATTCAGTAGAAGCAATCACTCTCTTTGATCAAATGTACATGAACTGTGTCAAGATGGATAAACTAACCTTCTTGAGTGTAATTCAAGCTTGTTCCCATCTGGGTTACTTAGAAAAGGGAAAATGGGTTCACCACAAGCTCATCATGTATGGTTTAAGGAAGGACTCTTACCTTGATACTGCACTGACTGACATGTATTCCAAGTGTGGAGAGCTTCAGATGGCCCATGGAGTTTTCGACCGCATGTCAGAACGGAGCATAGTTTCATGGAGTGTTATGATAGCTGGTTATGGGATGCACGGTCAGATCAATGCCACCATCTCACTCTTCAATCAAATGTTGGGGTCAGGAATAAAGCCAAATGATATTACTTTCATGCATATCCTATCAGCTTGTAGTCATGCAGGAGCAGTAGAAGAAGGGAAGCTATATTTTAACTCCATGAGTGAGTTTGGCGTTGAGCCCAAACACGATCATTTTGCTTGCATGGTTGACCTTCTGAGCCGAGCTGGTGATCTGAATGGAGCATATCAAATCATTACTTCATTGCCATTCCCTGCAAATTCCAGCATCTGGGGCGCTTTGCTTAATGGGTGTCGAATCCACAAGAGGATTGACATCATCAAAAGCATTGAAAAAAATCTGTTAGATGTAGATACAGCCGATACTGGATATTATACATTACTATCTAATATATATGCAGAGGAAGGAACCTGGGATAAATTTGGGAAGGTGAGATCCATGATGAAGAGTAAGGGTCTAAGGAAAGTCCCTGGCTACAGCACAATAGAGATTGACAAGAAAATTTATAGGTTTGGACCAGGCGATACATCTCATTCACAAACAAAGGACATATACAGATTCTTGGAAAATTTTCGGAGTTTGGTTCATGCTCAAGTTTATGATTCAGAACCTGATAATTCTATTGTTGGCACTAGTAAATTCAACAAAGAAAATAATGTTGTGAGTCACAGTGAGAAGTTGGCAATTGCCTTCGGAATAATCAACACCAGGCCAGGAACAACACTACGCATTTCTAAGAACCTTCGTGTTTGTAGAGATTGCCATTCCTTTGCAAAGATTGCGTCTAAAATCACAGGCAGAGAGATCATCATGAGAGATTTGAATCGGTTTCATTGTTTCAGGAATGGGAGTTGCTCTTGTAATGATTATTGGTGA 2289 0.4229 MILYMPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEANVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 334 IPR002885 -
Vvi1g0076 762 Gene3D Tetratricopeptide repeat domain 431 638 IPR011990 GO:0005515
Vvi1g0076 762 FunFam Pentatricopeptide repeat-containing protein 328 411 - -
Vvi1g0076 762 NCBIfam pentatricopeptide repeat 206 237 IPR002885 -
Vvi1g0076 762 NCBIfam pentatricopeptide repeat 458 491 IPR002885 -
Vvi1g0076 762 NCBIfam pentatricopeptide repeat 357 390 IPR002885 -
Vvi1g0076 762 NCBIfam pentatricopeptide repeat 307 329 IPR002885 -
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Vvi1g0076 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 405 699 IPR046960 GO:0003723|GO:0009451
Vvi1g0076 762 Pfam PPR repeat family 355 402 IPR002885 -
Vvi1g0076 762 Pfam PPR repeat family 456 503 IPR002885 -
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Vvi1g0076 762 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 430 638 - -
Vvi1g0076 762 Gene3D Tetratricopeptide repeat domain 150 273 IPR011990 GO:0005515
Vvi1g0076 762 Gene3D Tetratricopeptide repeat domain 329 425 IPR011990 GO:0005515
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Vvi1g0076 762 Pfam DYW family of nucleic acid deaminases 685 762 IPR032867 GO:0008270
Vvi1g0076 762 Pfam E motif 583 634 IPR046848 -
Vvi1g0076 762 FunFam Os01g0913400 protein 259 327 - -
Vvi1g0076 762 FunFam Pentatricopeptide repeat-containing protein mitochondrial 26 122 - -
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi1g0076 762 Pfam PPR repeat 65 91 IPR002885 -
Vvi1g0076 762 Pfam PPR repeat 206 232 IPR002885 -
Vvi1g0076 762 Pfam PPR repeat 307 329 IPR002885 -
Vvi1g0076 762 Pfam PPR repeat 167 194 IPR002885 -
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Vvi1g0076 762 Gene3D Tetratricopeptide repeat domain 275 328 IPR011990 GO:0005515
Vvi1g0076 762 Gene3D Tetratricopeptide repeat domain 26 118 IPR011990 GO:0005515
Vvi1g0076 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0076 Vvi-Chr1 760513 763140 Tandem