Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0069 ATGAGCCGGGGTCATGATTTGGAGAATGATTCTGAGTATGCAACTGCAGTGGCTGCAGCTGCATATGCCGTTCACTCGCTGGAAGAAACCAGAATCCCAGATCAGAAAAAGAAGAGTGAAGGCCCTGAACCTTCTCCAACCAGGGCCATAAGCAAAAAGGAAGGAACTACCTCTGCAGTTCTAGATCCTGGTAGATCATCCAGGCGACTTTCAGGTGAAGCTTCACTCAGAATTTCAGATGGTAAAGAGAGGAGGGCACCAATAAAAACAGCAGAGAAGACGACTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCCCATCAGTACAAAAAACTCCAACAGTAAAGTCTGCTGTTGCTCCTGCTACCTCCATGAAAAAGGCTCCAACAGAGGAGCCTTCTGCTGCTGGCGCTTCATTCAGTAAAAAACCGCTGGACAAGGCGGCCAGCAGAAAACAAGACATTGCAGCGCCAAAACCTACCCCGCCGCCACCGCCACCACCACCCCCACCACCCACCAAAGAGCCTGCAACCCGAAAAGCTCAAGCCACAAGGGGGAGACCGATTGGAGAAATAGAGATAGATGCTTGGGAGAAGGCTGAGATGGCTAAGATCAAGGAAAAGTTTGACAAGGTGAATGGCGAGATTGCCTCCTGGGCTGATAAGAAGAAGAAGAAGGCCAAGCTCAAACTGGATAAAATAGAGGGGGCATTGGATCAGAAAAGAGCGAAAGCCCTGCGGCATGATCGGACTGACATAAACATATCTAAACTGCAGGCGGCATTGGATCAGAAAAGAGCGAAAGCCCTGCGGCATTACCGAACTGACATACAAAACATTGATTATGTAGCAGGAGGGGCTAAAGCGCAGGCAGAGGAAAAGCGAAGAAATGAAGAGCTGAAAGTGAAAGAGAAGTCGAAGATCATCAGAGAGACGGGGCAATTCCCCCCGACATGCCTCTGTTTCTGA 969 0.5046 MSRGHDLENDSEYATAVAAAAYAVHSLEETRIPDQKKKSEGPEPSPTRAISKKEGTTSAVLDPGRSSRRLSGEASLRISDGKERRAPIKTAEKTTPPPPPPPPPPPPSVQKTPTVKSAVAPATSMKKAPTEEPSAAGASFSKKPLDKAASRKQDIAAPKPTPPPPPPPPPPPTKEPATRKAQATRGRPIGEIEIDAWEKAEMAKIKEKFDKVNGEIASWADKKKKKAKLKLDKIEGALDQKRAKALRHDRTDINISKLQAALDQKRAKALRHYRTDIQNIDYVAGGAKAQAEEKRRNEELKVKEKSKIIRETGQFPPTCLCF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0069 322 Coils Coil 288 308 - -
Vvi1g0069 322 MobiDBLite consensus disorder prediction 75 90 - -
Vvi1g0069 322 MobiDBLite consensus disorder prediction 29 43 - -
Vvi1g0069 322 Coils Coil 224 244 - -
Vvi1g0069 322 PRINTS Proline rich extensin signature 94 106 - -
Vvi1g0069 322 PRINTS Proline rich extensin signature 108 129 - -
Vvi1g0069 322 PRINTS Proline rich extensin signature 159 176 - -
Vvi1g0069 322 PRINTS Proline rich extensin signature 129 145 - -
Vvi1g0069 322 SUPERFAMILY Formin homology 2 domain (FH2 domain) 162 269 - -
Vvi1g0069 322 MobiDBLite consensus disorder prediction 157 176 - -
Vvi1g0069 322 PANTHER OS02G0116800 PROTEIN 8 321 - -
Vvi1g0069 322 Pfam Remorin, C-terminal region 254 316 IPR005516 -
Vvi1g0069 322 Pfam Remorin, C-terminal region 192 248 IPR005516 -
Vvi1g0069 322 MobiDBLite consensus disorder prediction 50 64 - -
Vvi1g0069 322 MobiDBLite consensus disorder prediction 92 111 - -
Vvi1g0069 322 MobiDBLite consensus disorder prediction 28 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0069 Vvi-Chr1 727176 728802 Dispersed/Wgd