Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0066 ATGTCTGCAAATATGAGCCTTCGCCTGATTACATATTCCGAAGAGCTTGTAAATGGACAACCAATTTATGTTTCATCAAATTGTCTTCCCTTGAAGGCTTTTAGACTTGAACCAGCGGGGCATGCTTTCCACTCTGCTGCTCTAAGAGTTCTTGGGTGTTGTGAGGAAGAAGGTGAAGATGAGGATGATCAGAATGTGCCCAATGATAAGGAGCAAAGTTATTTTCCATCATCGGGTTCATATAGCAGCAAAGGTAAAAAGAAATCTGGTGCTGAAGGCAAACAACAGGATCATTATGCATTGTTGGGTTTAAGCCATTTAAGATTCCTTGCCACTGAGGACCAGATAAGAAAGAGCTACCGTGAAACTGCTTTGAAGCATCATCCTGACAAACAGGCTGCTCTCATTCTTGCTGAGGAAACTGAAGCTGCAAAGCAAGCGAAGAAAGATGAAATAGAGAACCACTTCAAGTCCATCCAAGAAGCATATGAGGTGTTAATTGATCCTGTGAAGAGAAGAATTTACGACTCTACAGATGAATTTGATGATGAAATTCCAACTGATTGTGAGCCACAAGACTTCTTCAAAGTATTTGGTCCAGCCTTTATGAGGAATAGCAGATGGTCGGTTAACCAACCGGTTCCTACTCTAGGGGAAGAGAATACTCCACTTAAAGAAGTCGATATGTTTTATAATTTTTGGTATTGCTTTAAAAGTTGGAGAGAGTTCCCTCATACAGATGAGTTTGATCTTGAACAAGCTGAGTCTCGCGATCATAAGAGATGGATGGAGAGACAGAATGCAAAACTTTCAGAAAAAGCAAGAAAGGAAGAATATGTACGGATACGTTCTCTCATTGATAATGCTTATAAAAGAGATCCTAGAATACTTAGGAGAAAGGAGGAGGAGCGAGCAGAAAAGCAGAAAAAAAGGCAGGCCAAATATTTGGCAAAGAAGTTGCAGGAGGAGGAAGCAGCCAGGATTGCTGAAGAGGAGAGACGGCAGAAAGAGGAAGAGGAAAAACGAGCTGCTGAAGCAGCTTCACACCAGAAGAAGGTGAAGGAAAAAGAGAAGAAGCTCTTGCGGAAAGAGCGAACCCGTCTTCGAACTCTATCAGCTCCTGTTTTGACCCAAAATCTGTTCAATATTACTGAAGATGATGTGGAAAGTCTCTGTATGTCACTTGAAACTGAGCAGTTGAGGAATTTATGTGACAAGATCGAGGGAGCAGAAGGGCTTGAACGAGGTAAACTTCTCAGAGATGCACGTGGAGGCAATACTGACTCAACAGGTAAGAAACAAGGTGAGAAGAATCCACAGCAGAATGGTTCTGTGGAAGTTAATGGAAATGTCCCATTAGGCAAGTATGAGAAAAAGGAGAAACCTTGGGAAAGAGAAGAAATTGAGCTCTTGAGAAAAGGGATGCAGAAATATCCCAAAGGAACATCTCGAAGATGGGAGGTTATTTCAGAATACATTGGCACAGGAAGATCCGTTGACGAGATATTGAAGGCAACAAAAACAGTTCTTCTCCAGAAGCCCGATGCCACCAAAGCTTTTGATTCATTCCTTGAGAAGAGAAAGCCGGCTCAGTCCATTGCATCTCCACTTACAACTAGAGAGGAAACAGAGGGAGTACTCATCCAGAATGGGCCTGAAAGTAATGCTTCTAATAAGGATAACTTGAAGGAGTCTTCAAGCACAAGTGGGAAACAACAAAATCCTGATGGTGCGGTTGCTTCAAATGGGGTTACTTCAAGTTCAGAGCAAGATTTGTGGTCTGCTGTTCAAGAAAGGGCTCTAGTTCAAGCCCTGAAGACATTTCCAAAGGAAACTAATCAGCGTTGGGAACGAGTTGCTGCTGCAGTTCCTGGGAAAACTGTGAACCAGTGCAAGAAGAAGTTTGCATTGCTGAAGGAGCATTTCAGAAACAAGAAAAATGCTGTTTAG 1950 0.4236 MSANMSLRLITYSEELVNGQPIYVSSNCLPLKAFRLEPAGHAFHSAALRVLGCCEEEGEDEDDQNVPNDKEQSYFPSSGSYSSKGKKKSGAEGKQQDHYALLGLSHLRFLATEDQIRKSYRETALKHHPDKQAALILAEETEAAKQAKKDEIENHFKSIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCEPQDFFKVFGPAFMRNSRWSVNQPVPTLGEENTPLKEVDMFYNFWYCFKSWREFPHTDEFDLEQAESRDHKRWMERQNAKLSEKARKEEYVRIRSLIDNAYKRDPRILRRKEEERAEKQKKRQAKYLAKKLQEEEAARIAEEERRQKEEEEKRAAEAASHQKKVKEKEKKLLRKERTRLRTLSAPVLTQNLFNITEDDVESLCMSLETEQLRNLCDKIEGAEGLERGKLLRDARGGNTDSTGKKQGEKNPQQNGSVEVNGNVPLGKYEKKEKPWEREEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVDEILKATKTVLLQKPDATKAFDSFLEKRKPAQSIASPLTTREETEGVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTSSSEQDLWSAVQERALVQALKTFPKETNQRWERVAAAVPGKTVNQCKKKFALLKEHFRNKKNAV* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0066 649 CDD SANT 593 639 IPR001005 -
Vvi1g0066 649 MobiDBLite consensus disorder prediction 69 85 - -
Vvi1g0066 649 SUPERFAMILY Homeodomain-like 458 503 IPR009057 -
Vvi1g0066 649 ProSiteProfiles Myb-like domain profile. 585 635 IPR001005 -
Vvi1g0066 649 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Vvi1g0066 649 PRINTS DnaJ domain signature 120 135 IPR001623 -
Vvi1g0066 649 PRINTS DnaJ domain signature 151 171 IPR001623 -
Vvi1g0066 649 PRINTS DnaJ domain signature 102 120 IPR001623 -
Vvi1g0066 649 SMART dnaj_3 96 171 IPR001623 -
Vvi1g0066 649 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Vvi1g0066 649 ProSiteProfiles Myb-like domain profile. 455 498 IPR001005 -
Vvi1g0066 649 MobiDBLite consensus disorder prediction 548 586 - -
Vvi1g0066 649 CDD SANT 462 502 IPR001005 -
Vvi1g0066 649 Gene3D DnaJ domain 80 191 IPR036869 -
Vvi1g0066 649 SUPERFAMILY Chaperone J-domain 80 175 IPR036869 -
Vvi1g0066 649 MobiDBLite consensus disorder prediction 58 92 - -
Vvi1g0066 649 FunFam Myb family transcription factor 587 647 - -
Vvi1g0066 649 Gene3D - 583 649 - -
Vvi1g0066 649 MobiDBLite consensus disorder prediction 331 357 - -
Vvi1g0066 649 Pfam Myb-like DNA-binding domain 593 636 IPR001005 -
Vvi1g0066 649 SUPERFAMILY Homeodomain-like 591 647 IPR009057 -
Vvi1g0066 649 CDD DnaJ 97 168 IPR001623 -
Vvi1g0066 649 Gene3D - 456 513 - -
Vvi1g0066 649 MobiDBLite consensus disorder prediction 415 458 - -
Vvi1g0066 649 Coils Coil 298 366 - -
Vvi1g0066 649 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 5 648 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g0066 649 SMART sant 589 641 IPR001005 -
Vvi1g0066 649 SMART sant 459 512 IPR001005 -
Vvi1g0066 649 Pfam DnaJ domain 97 176 IPR001623 -
Vvi1g0066 649 MobiDBLite consensus disorder prediction 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0066 Vvi-Chr1 711077 713026 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g0066 DnaJ 2.9e-18 CL0392