Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0064 ATGGAGGAGGAAGATGAAGATCCACCGCTGGCAGTTGAAATCAACAAATCAACACCCCCACAATCCCAAAACGACGACGTTTCAGTGGGCGTAACCGTCATCACAGGCTATCTTGGCGCCGGCAAATCCACTTTTGTTAATTTTATTTTGAATTCACAACACGGAAAGAGGATTGCTGTTATATTGAATGAGTTTGGTGAAGAGATTGGAGTAGAAAGGGCAATGATAAATGAAGGGGACAATGGAGCACTTGTGGAAGAGTGGGTTGAGCTTGCAAATGGGTGCATCTGTTGCACTGTCAAGCATAGTCTGGTTCAAGCTCTGGAGCAACTCGTGCAGATGAAGGAAAGGCTTGATCATATTTTACTAGAGACCACTGGGTTAGCAAACCCTGCTCCTCTTGCTTCTGTTCTTTGGTTGGATGATCAGTTGGAATCTTCAGTCAGACTTGATTCTATTATTACTGTTGTGGATGCAAAAAACCTCCGTTTTCAGCTGAATTCACATCATGGTTCATCTTCATTTCCCGAAGCTTTTCTTCAAATAGCGTTTGCGGATGTTGTAATTCTTAACAAGGTTGATTTGGTTTCTCCAGAGGAATCTGGAGGTGTTCTGGAGGAACTGGAGAAGGAGATACATAACATTAACTCCCTGGCAAACATCATACATTCTGTTCGGTGTCAAGTTGACTTGTCTAAGATATTGGACTGCCGGGCCTATGATGCTACTCATGCCACACATTTAGAAGCATTATTAGAAGAAAATCAATCTCTATCAAGCAAGGACCTTCATGATAGTAATGTTCGAACTTTGTGCATCAGTGAGCCACTGCCTGTTGATCTTGACAAGGTTCGTTTGTGGCTTGAGGAGATTCTTTGGGATAAGAAGTATAGCATGGATGTCTACCGTTGCAAAGGGGTTTTACGTGTTCTTGACTCAGATCAACTACATACATTGCAGGCTGTGAGGGAGATATATGAGATTGTTCCAACTCGTAAATGGAAAAATGAAGAAAATCAGATGAACAAGATTGTTTTTATAGGTCATAATCTGAACGAGGATGCTCTTACAAATTCCTTCAGAGCTTGCATGTCGATAAGCAACGGGCTGGTTTTTTATTACCTTTTAAAAAACGTCGTCAAAACAAGCGTGGTTTATAATAACTACGGTGTGGCGCATGAACACCGGATACTTTTTTTTTCCCAGATAAATCCTAAAATCACCCGAATGTCAGTTCTCTCTAAAAACCCTAATCCCTCTTGGTCTCACTCTTCCTCGACCGTGGAGAAGGAGAAGAAAGCGAGTGATTCAACAATCTCCCTTCCTTCGCCAACTGAACGCTTTAGTTCCAAGGAGCATCTCAACACCTCACAGACCAAACCCCATATCTCCACACAAATGGCACTGGTTGTGATTTGTGGGCAACCCTGCAGTGGGAAGTCAACTGCTGCAGTCTGCCTAGATGGAGCTCTAAAAGACTCGGAATCCAAACTGACGGTCAGGGTAATTGATGAAGCCTCCTTTCATCTTGATCGCAATCAATGCTACGCCAATATGACTGAAGAAAAAATGTTGAGAGGAGTGCTCAGATCTGAAGTTGATAGATCTGTGTCAAAAGACAGTATTATCATAGTGGATTCCTTGAACAGCATCAAGGGTTACAGATACGAGTTGTGGTGTTTGGCTCGTGCTGCAGGTATAAGATATTGCGTGCTGTTTTGTGATGTAGAGGAATCCCATTGTAGAACATGGAATGAACAACGCAGCGAGAATGGAGAAGCTTCATATGATGATAAAATATTTGAAGATTTGGTAAGAAGGTTTGAGAAACCAGATAGAAGAAACCGATGGGATTCCCCCTTGTTTGAACTATGGCCATTTAGAGATGGGATAGAGAAATCCTCTGCTGCCATTTCAGATGCTGTTTCATACTTGACAAAAAAGGCCGACTCAAAAACACGAGACATCAAAATTCTGCAGCCTACAATAGCAACAAAAAGTGCCCGGTTCTCAGAGGCCAATTCGCTCTATGAGATGGACAGGGCAACACAGGAGATCATCAATGCTATTGTGGAAGCACAATCCCAGGCAGTTGGAGGGCCTGTAAATGGCATCTCTCTGGGCCAGGGATTAGCACCTATCAATATCTCAAAATCAGTTGGACTGCCAGAGCTACGAAGGCTGCGACGAACATTCATAAAACTGACTGGACAGACGAGCTTAAGCGGGCCGCCCCCACCATCTGATTCAGACAGTGCAAAGAGAATGTTTGTGGATTACTTGAACAGAGAATTAGGAAGTGCTTAA 2307 0.4313 MEEEDEDPPLAVEINKSTPPQSQNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKRIAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKERLDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPEAFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDCRAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWLEEILWDKKYSMDVYRCKGVLRVLDSDQLHTLQAVREIYEIVPTRKWKNEENQMNKIVFIGHNLNEDALTNSFRACMSISNGLVFYYLLKNVVKTSVVYNNYGVAHEHRILFFSQINPKITRMSVLSKNPNPSWSHSSSTVEKEKKASDSTISLPSPTERFSSKEHLNTSQTKPHISTQMALVVICGQPCSGKSTAAVCLDGALKDSESKLTVRVIDEASFHLDRNQCYANMTEEKMLRGVLRSEVDRSVSKDSIIIVDSLNSIKGYRYELWCLARAAGIRYCVLFCDVEESHCRTWNEQRSENGEASYDDKIFEDLVRRFEKPDRRNRWDSPLFELWPFRDGIEKSSAAISDAVSYLTKKADSKTRDIKILQPTIATKSARFSEANSLYEMDRATQEIINAIVEAQSQAVGGPVNGISLGQGLAPINISKSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDSDSAKRMFVDYLNRELGSA* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0064 768 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 268 364 - -
Vvi1g0064 768 CDD CobW-like 31 238 - -
Vvi1g0064 768 Gene3D - 249 365 IPR036627 -
Vvi1g0064 768 PANTHER COBW-RELATED 24 364 - -
Vvi1g0064 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 614 IPR027417 -
Vvi1g0064 768 Gene3D - 465 657 IPR027417 -
Vvi1g0064 768 Coils Coil 104 124 - -
Vvi1g0064 768 FunFam KTI12 chromatin-associated homolog 467 658 - -
Vvi1g0064 768 SMART CobW_C_3 268 364 IPR011629 -
Vvi1g0064 768 Pfam Chromatin associated protein KTI12 467 762 IPR013641 -
Vvi1g0064 768 Gene3D - 28 241 IPR027417 -
Vvi1g0064 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 248 IPR027417 -
Vvi1g0064 768 MobiDBLite consensus disorder prediction 437 460 - -
Vvi1g0064 768 Pfam CobW/HypB/UreG, nucleotide-binding domain 31 222 IPR003495 -
Vvi1g0064 768 Pfam Cobalamin synthesis protein cobW C-terminal domain 269 363 IPR011629 -
Vvi1g0064 768 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g0064 768 MobiDBLite consensus disorder prediction 414 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0064 Vvi-Chr1 688288 695812 Dispersed