Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0062 ATGGCGTTCGGGAGATTCATCTGTTTGTTCACAGTTGCGGCCTTTCTGGTGTCGCTTCGACCATGCCTATCGGAAAATATCACCAGAGGAAGCTTCCCGAAGGGGTTCGTCTTCGGGACTGCCTCTTCTGCTTTCCAGTATGAAGGAGCCGTGAAAGAGGATGAAAGGGGGCTGTCCGTGTGGGACAATTTTTCTCATACAGCTGGCAAGATACTTGACTTCAGTAATGCAGACGTAGCTGTGGACCATTACCACCTATACCCTGATGATGTACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTGATGGAACCGGGAAAATAAATCAGGCAGGAGTCGACCATTACAATAGGCTCATCAATGCCTTAATAGCAGAAGGGATTGAACCATATGTGACACTGTACCATTGGGACCTCCCTCAAGCTTTGCAAGACAAATACAATGGATGGCTGGACCCCCAGATCATAAAGGACTTTGCCCTCTACGCTGAGACATGCTTTCAGCAGTTTGGTGACAGGGTGAAGCACTGGATCACATTCAATGAACCACACACCTTCACAGTCCAAGGCTATGATGTAGGGCTGCACGCACCAGGCCATTGTTCCATCCTCCTCCGCCTCTTCTGCAGGGCTGGAAACTCTGCAACTGAGCCTTACATAGTTGCACACCATGTTCTCCTCTCCCATGCAACTGTGGCAGATATATACCGAAAAAAGTACAAGGCTAAGCAGATGGGATCGCTTGGTGTGGCATTTGATGTTATCTGGTTTGAGCCGAAGACGAACTCTACAGAGGACATTGAAGCAACTCAAAGAGCTCAGGATTTTCAGCTGGGCTGGTTCATCGATCCTCTGATGTTTGGGGATTATCCAAAGTCCATGAAATATAGAGTAGGAAGCCGGTTGCCAAACTTTACCAGAGATGAGTCTACTCTCCTTAAAGGGTCTTTGGATTTTGTTGGCATAAACCACTACACAACATTTTATGCAGAAAGCAATGCAACCAACTTGATTGGGTTTCTACTCAACGATTCCCTGGCAGACAGCGGGGCCATTACCCTTCCTTTCAGCAAAGATGGACAACCTATAGGAGACAGGGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAAATGGGATGGATGATGGAAACAATCCATTGACTCCTATTAAAGATGCTTTGAAGGATGACAAAAGGATCAAATACCACGATGACTACCTGCAGAGTTTGCTGGCTTCCATTAAAGAGGACGGGTGCAATGTGAAAGGGTATTTTGTATGGTCTCTGTTAGATAATTGGGAGTGGGGAGCTGGATTCACTTCGAGGTTTGGTCTCTTCTTTGTGGATTATAAGGACAAGCTCAAGAGATACCCCAAGAACTCTGTTCAATGGTTCAAGAACTTCCTGAATTCTCCCTAA 1518 0.4592 MAFGRFICLFTVAAFLVSLRPCLSENITRGSFPKGFVFGTASSAFQYEGAVKEDERGLSVWDNFSHTAGKILDFSNADVAVDHYHLYPDDVQLMKNMGMDAYRFSISWSRIFPDGTGKINQAGVDHYNRLINALIAEGIEPYVTLYHWDLPQALQDKYNGWLDPQIIKDFALYAETCFQQFGDRVKHWITFNEPHTFTVQGYDVGLHAPGHCSILLRLFCRAGNSATEPYIVAHHVLLSHATVADIYRKKYKAKQMGSLGVAFDVIWFEPKTNSTEDIEATQRAQDFQLGWFIDPLMFGDYPKSMKYRVGSRLPNFTRDESTLLKGSLDFVGINHYTTFYAESNATNLIGFLLNDSLADSGAITLPFSKDGQPIGDRANSIWLYIVPRGMRSLMNYIKQKYGNPPVIITENGMDDGNNPLTPIKDALKDDKRIKYHDDYLQSLLASIKEDGCNVKGYFVWSLLDNWEWGAGFTSRFGLFFVDYKDKLKRYPKNSVQWFKNFLNSP* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0062 505 Pfam Glycosyl hydrolase family 1 30 502 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 FunFam Beta-glucosidase 12 18 504 - -
Vvi1g0062 505 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 36 50 IPR033132 -
Vvi1g0062 505 SUPERFAMILY (Trans)glycosidases 26 502 IPR017853 -
Vvi1g0062 505 PRINTS Glycosyl hydrolase family 1 signature 475 487 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 PRINTS Glycosyl hydrolase family 1 signature 327 341 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 PRINTS Glycosyl hydrolase family 1 signature 451 468 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 PRINTS Glycosyl hydrolase family 1 signature 406 414 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 PRINTS Glycosyl hydrolase family 1 signature 429 440 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 PANTHER GLYCOSYL HYDROLASE 31 503 IPR001360 GO:0004553|GO:0005975
Vvi1g0062 505 Gene3D Glycosidases 20 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0062 Vvi-Chr1 668068 673507 Dispersed/Tandem