Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0059 ATGGACGATAACGACAATCCCGATCCGGGAAACGATTTCTCCGGAGACTCGAGCTGGACACTGGGAGCTGAGTCCGACAGTGTCTACTTCTTCGGCAGTGATAAGGAGAGCAGTATTCTGAGCGAGTTTGGGTGGAATCTGCAGCCGGAGGAGGCACACCACAGGAGTCTCGAGCCGGAGAGGTTCGGTGACGTGGAGCGGATCGAGAGTTCAGATTTGGCGGGAAGGTTGCCGTTGGCAGAGAGCAGCGGTTTGGAGTGTTCAGCCGCGGCAGCGCAAATCGGATCGGCGGAGAAAGCTGGTGACGCGTCGACGTCGAATCCGTCTGTGTCTTCGAGCTCCAGCGAGGATCCGCCGGAGAAGTCGACGGGGTCCGGCGGCGGGAAGCCTCCTGAAATACCGAGTAAAGGGCGGAAGAAGGGGCAAAAGCGAATTAGGCAGCCGCGCTTTGCGTTTATGACCAAGAGTGAAGTTGATCATCTTGAAGACGGCTATCGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGAACGCTCCTCGGAGGATCCCAGCATCGTAATCACTACATATGAAGGCCAACACTGTCATCATACAGTTGGATTCCCCCGCGGTGGAGTCATTAGTCAAGAGGTTACCTTTGATGGCCGTATGACCCCTCCATTAACATCACACTTTTATTATCCAGATATGTCGTTCCACCGTGAAGTTTCTCATAGTGGTAGCATGGCACAGTCACACCAAGTCCCAGCCCAAGCTAGAGAAGCACGCGCACTGGCTGAGCCAAGCCCACAGCTTCCCACTGATGAAGGACTGCTTGGGGACATGGTGCCTCCTGGAATGCGCAATGGATGA 918 0.5403 MDDNDNPDPGNDFSGDSSWTLGAESDSVYFFGSDKESSILSEFGWNLQPEEAHHRSLEPERFGDVERIESSDLAGRLPLAESSGLECSAAAAQIGSAEKAGDASTSNPSVSSSSSEDPPEKSTGSGGGKPPEIPSKGRKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPSIVITTYEGQHCHHTVGFPRGGVISQEVTFDGRMTPPLTSHFYYPDMSFHREVSHSGSMAQSHQVPAQAREARALAEPSPQLPTDEGLLGDMVPPGMRNG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0059 305 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 259 IPR044810 GO:0003700
Vvi1g0059 305 Pfam WRKY DNA -binding domain 162 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g0059 305 SUPERFAMILY WRKY DNA-binding domain 153 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g0059 305 SMART WRKY_cls 161 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g0059 305 ProSiteProfiles WRKY domain profile. 156 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g0059 305 MobiDBLite consensus disorder prediction 82 151 - -
Vvi1g0059 305 FunFam WRKY transcription factor 57 147 221 - -
Vvi1g0059 305 MobiDBLite consensus disorder prediction 99 121 - -
Vvi1g0059 305 Gene3D WRKY domain 148 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g0059 305 MobiDBLite consensus disorder prediction 259 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0059 Vvi-Chr1 630941 633424 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi1g0059 WRKY 1.3e-25 CL0274