Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0058 ATGGAGGAGGAAGATCAGAAGACGAAGCATGTGTGCAAGCTCTGCAACAAGAGGTACCCTTCTGGGAAGTCCTTGGGGGGTCACATGAGGTCTCATATGATTGGGAATTCAGCTGAAGCTGCAGAGAGAAAGAAAATTTCATCTTTGAATGGTGGGAGAAGCAGCAAGAAGGAGTCAGGGTTTGAAGGTGGTGGGCATTCTGCATACGGTCTCAGAGAGAACCCTAAGAAAACATGGAGGCTGGCTAATTCAAGGAGTGGTTCACAGCAAGAGAATGTTTGTAAAGAATGTGGTAAAGTGTTTCAGTCTTTGAAAGCTCTTTGTGGTCACATGGCTTGTCACTCTGAGAAGGAGAGACTTTCAAGCAATTTGGAAGATCATTCTTGGACCAATGCTAGCCAGAAACCAGTAATGGATAGGCGAAAGAGGTCGAAAAGGACGAATTTTAACAGGACTCTTGCTGTTTACCCTTCTCCATCTGTTTCTGACACTGAGCAAGAGCAGCAAGAGTTGGCTATTTGTTTGATGATGCTGTCTAGGGATTCTGGGCATTGGGGTGGTTTGAATTCGCTTGTGTATTCTTCAGACAACAATTCTGTGGTCTTAGAGGCCAAATCATCCTCTATTGATATGAGAATTTGTAGGGGAGAAGATATGAATTGTGTTTCTGATGGTGATGAGATTGTGGAGACGAAGAAATTAGGAGATGGGAAGTCAAAATCTGCTGTTTTGGACTCTGAGGCTGGTCCGTTTGAGAATTCTGATTCTGGGTATTTTATGAATGGAGCCCAGAGGGTTGAATCAGATGTTTCTGTGGATGGGGTTTTCAGGAATGTTGAATCTCTGGAGCTTAAACTGGAAGATGGATCTGGGTTTGATGTGTTTGGTGCTGAATCTGGGAAGGGTTTAAAGAGACTCAAATGTATGAAAGCTGGATTGGGGAAGGATTTGAAGAGACCCAAATGTGTGAAAACTGAATTGGGAAAGGGTCTGCTCAAACAAGAAGGATATGATCGGGTGAATAGAGCTTCAGTGGAGTACGATTTGAGTAAGAGAGCTAAGAATGATTCTTACTCAGAAGAGAATGTTCGGAAGAGAAGCAAGTATCAATGTCTGACTTGTAACAAGACCTTTCACTCTCACCAGGCTCTTGGGGGTCACAGAGCCAACCATAAAAGGGTGGAAGGATGCAATTCATCGAACTATGAGAGCATTGAGAACAGCATAGAGACTGATACTTGCCCTGGCCCTACACCCCATAAGAAGCTAGCTCGATTTGGCAGTGGAAAAACCCCAATTGCTCAGGATTTGTCTGGCAAAGCTGAGAAAAAGATCGGGTCAAGGAAAAGCAATGGGCACATGTGCCCAATCTGCTTCAAAGTTTTCCGATCAGGACAAGCTTTAGGTGGTCATAAGAAGTCCCATTTTGTAGGAGTTTGTGAAGACGAAAACAGTAGGACTTTAGTAATCAAGCAAGAGCCTCTTGAGATTCCTGGTCTCATTGATCTTAATCTTCCTGCTCCTATTGAGGAAGAAGCTAATGAGCATGTTGGGTTCATGATATCATAG 1569 0.4372 MEEEDQKTKHVCKLCNKRYPSGKSLGGHMRSHMIGNSAEAAERKKISSLNGGRSSKKESGFEGGGHSAYGLRENPKKTWRLANSRSGSQQENVCKECGKVFQSLKALCGHMACHSEKERLSSNLEDHSWTNASQKPVMDRRKRSKRTNFNRTLAVYPSPSVSDTEQEQQELAICLMMLSRDSGHWGGLNSLVYSSDNNSVVLEAKSSSIDMRICRGEDMNCVSDGDEIVETKKLGDGKSKSAVLDSEAGPFENSDSGYFMNGAQRVESDVSVDGVFRNVESLELKLEDGSGFDVFGAESGKGLKRLKCMKAGLGKDLKRPKCVKTELGKGLLKQEGYDRVNRASVEYDLSKRAKNDSYSEENVRKRSKYQCLTCNKTFHSHQALGGHRANHKRVEGCNSSNYESIENSIETDTCPGPTPHKKLARFGSGKTPIAQDLSGKAEKKIGSRKSNGHMCPICFKVFRSGQALGGHKKSHFVGVCEDENSRTLVIKQEPLEIPGLIDLNLPAPIEEEANEHVGFMIS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0058 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 32 IPR013087 -
Vvi1g0058 522 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
Vvi1g0058 522 Gene3D Classic Zinc Finger 7 114 - -
Vvi1g0058 522 ProSitePatterns Zinc finger C2H2 type domain signature. 455 475 IPR013087 -
Vvi1g0058 522 Gene3D Classic Zinc Finger 366 475 - -
Vvi1g0058 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 453 475 IPR013087 -
Vvi1g0058 522 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vvi1g0058 522 SMART c2h2final6 369 391 IPR013087 -
Vvi1g0058 522 SMART c2h2final6 10 32 IPR013087 -
Vvi1g0058 522 SMART c2h2final6 453 475 IPR013087 -
Vvi1g0058 522 SMART c2h2final6 92 114 IPR013087 -
Vvi1g0058 522 ProSitePatterns Zinc finger C2H2 type domain signature. 371 391 IPR013087 -
Vvi1g0058 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 369 396 IPR013087 -
Vvi1g0058 522 MobiDBLite consensus disorder prediction 23 76 - -
Vvi1g0058 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Vvi1g0058 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 513 - -
Vvi1g0058 522 SUPERFAMILY beta-beta-alpha zinc fingers 369 475 IPR036236 -
Vvi1g0058 522 SUPERFAMILY beta-beta-alpha zinc fingers 10 114 IPR036236 -
Vvi1g0058 522 Pfam C2H2-type zinc finger 369 393 - -
Vvi1g0058 522 Pfam C2H2-type zinc finger 453 475 - -
Vvi1g0058 522 Pfam C2H2-type zinc finger 93 116 - -
Vvi1g0058 522 Pfam C2H2-type zinc finger 10 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0058 Vvi-Chr1 616107 617675 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0058 zf-C2H2_6 4.5e-07 CL0361