Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0056 ATGGTGAAGATATGTTGCATTGGGGCTGGCTATGTGGGGGGCCCAACCATGGCTGTGATTGCCCTCAAGTGCCCGGATATCGAAGTGGCGGTTGTCGACATCTCTGTAGGCAGGATCAATGCCTGGAACAGTGATCAACTGCCTATCTATGAGCCAGGCCTTGATGAGGTGGTGAAGCAGTGTAGAGGGAAGAACCTTTTCTTCTCCACAGATGTGGAGAAGCATGTTTCTGAGGCAGACATAGTGTTTGTTTCAGTCAACACACCAACTAAAACTCAGGGGCTTGGAGCTGGCAAGGCAGCTGATCTGACTTATTGGGAGAGCGCTGCTCGAATGATTGCCGATGTATCCAAGTCTGATAAAATTGTTGTTGAGAAATCGACAGTCCCTGTGAAGACAGCTGAGGCCATAGAAAAAATTCTGACCCACAACAGCAAGGGGATCAACTTCCAGATTCTATCCAACCCAGAATTCCTTGCTGAGGGAACTGCAATTCAGGATCTGTTCAATCCAGATCGGGTCCTCATAGGAGGTAGGGAGACACCTGAGGGTCAGAAGGCAATCAAGGCACTGAGAGATGTATATGCCCATTGGGTCCCTGTGGAGCGTATTATTTGCACCAATCTTTGGTCTGCTGAGCTCTCAAAGCTCGCTGCCAATGCCTTTTTGGCACAGAGGATCTCTTCGGTTAATGCCATGTCAGCTCTCTGTGAGGCCACTGGCGCAGATGTCACTGAAGTGTCTCATGCTGTTGGTAAGGACACAAGAATTGGGCCCAAGTTCCTGAACGCCAGTGTTGGTTTCGGTGGCTCCTGCTTCCAGAAGGATATCTTGAACTTGGTATATATCTGTGAGTGCAATGGGCTTCCTGAGGTAGCAAACTACTGGAAACAGGTCATTAAGGTGAATGACTACCAGAAGACCCGCTTTGTTAACCGGGTGGTTTCCTCAATGTTTAACACAGTCTCAGGCAAGAAGATCGCCATTCTAGGCTTTGCCTTCAAGAAGGACACTGGTGACACAAGGGAGACCCCAGCCATTGATGTGTGCAAGGGGCTGTTGGGTGACAAAGCCCATTTGAGCATATATGACCCTCAGGTTTCAGGGGAGCAGATTCAGAGGGATCTTGCAATGAAGAAGTTTGATTGGGACCATCCAATTCATCTTCAACCCTTGAGCCCCACCTCTGTGAAGCAAGTCAGTGTGGTCTGGGATGCCTATACTGCTACAAAGGATGCCCATGGAATCTGCATCCTGACCGAGTGGGATGAGTTCAAGTCCCTTGATTACAAGAAGATCTATGACAACATGCAGAAACCCGCATTCGTCTTTGATGGGCGGAACGTTGTGGATGCAGAGAAACTGAGGGAAATCGGATTCATTGTTTACTCCATTGGTAAGCCATTGGATGCATGGCTCAAGGACATGCCCGCTGTGGCATAA 1443 0.49 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVGRINAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIKALRDVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAHLSIYDPQVSGEQIQRDLAMKKFDWDHPIHLQPLSPTSVKQVSVVWDAYTATKDAHGICILTEWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0056 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Vvi1g0056 480 Gene3D - 241 478 - -
Vvi1g0056 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Vvi1g0056 480 FunFam UDP-glucose 6-dehydrogenase 1 208 - -
Vvi1g0056 480 FunFam UDP-glucose 6-dehydrogenase 241 478 - -
Vvi1g0056 480 NCBIfam nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Vvi1g0056 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Vvi1g0056 480 Gene3D - 209 240 - -
Vvi1g0056 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Vvi1g0056 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Vvi1g0056 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Vvi1g0056 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Vvi1g0056 480 Gene3D - 1 208 - -
Vvi1g0056 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Vvi1g0056 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 478 IPR028356 GO:0003979
Vvi1g0056 480 FunFam UDP-glucose 6-dehydrogenase 209 240 - -
Vvi1g0056 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0056 Vvi-Chr1 606078 607520 Dispersed/Wgd