Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0054 ATGATGTTCGGGTTTATGAAATCTCCCATGAATAAAGTTTTTAAGCACAATGCAGTTGACCCAGGACCAGGACCTTCTAACCCTTTTGATTCTGATACTGAAAATGATTCCAATCAAATCCATAGAGACTCAAAACGAGCTGCTTCTGAGCCTACACTCCCTGGACTAAACTTCAACATTGAGGACCAGTACAAGAACGATTTTCGCAACTCGGGAGGGCTAGAGAACCAGAGTGTGCAGGAACTGGAGAATTATGCTGCATACAAGGCTAAGGAGACTACCAAGACTGTCAACAACTGCCTGAAGATAGCTGAGGACATTAGGGAGGATGCTACCAATACCCTTGCCACTTTGCATCAGCAGGGTGAGCAAATCACCAGGACCCATATGATGGCTGCTGATATGGATAAGGATTTGAGCAAGGGTGAGAAGCTTTTGGGCAACCTTGGGGGCATGTTCTCCAGGACTTGGAAGCCAAAGAAATCCAAAGATATTACAGGGCCTCTTATCACAAGTGAAGACTCCAAAGGAGGGCCAGCCAGCTTGGAGCAGAGGCAAAAGCTGGGCTTAGCCCCAGCACCGAAAGGACGGACAACTTCTCGAGCACCTGGTCCTGAACCAACAGCTGCCATGCAGCAAGTTGAGGGAGAGATGTTGAAACAAGACGATGCCCTTTCTGACCTGAGTAATATCTTGGGGGACCTGAAGAATATGGCTGCTGACATGGGATCTGAACTTGATAGACAAAATAAAGCTCTTGATCATCTCAGTGATGATGTTGATGAGCTAAATGCTCGTGTGAAAGGCGCCAATCAGCGCGCACGACGACTACTTGCAAAGTGA 843 0.4733 MMFGFMKSPMNKVFKHNAVDPGPGPSNPFDSDTENDSNQIHRDSKRAASEPTLPGLNFNIEDQYKNDFRNSGGLENQSVQELENYAAYKAKETTKTVNNCLKIAEDIREDATNTLATLHQQGEQITRTHMMAADMDKDLSKGEKLLGNLGGMFSRTWKPKKSKDITGPLITSEDSKGGPASLEQRQKLGLAPAPKGRTTSRAPGPEPTAAMQQVEGEMLKQDDALSDLSNILGDLKNMAADMGSELDRQNKALDHLSDDVDELNARVKGANQRARRLLAK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0054 280 Coils Coil 101 121 - -
Vvi1g0054 280 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 215 277 IPR000727 -
Vvi1g0054 280 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 26 279 - -
Vvi1g0054 280 SUPERFAMILY SNARE fusion complex 211 278 - -
Vvi1g0054 280 Coils Coil 246 280 - -
Vvi1g0054 280 MobiDBLite consensus disorder prediction 16 58 - -
Vvi1g0054 280 CDD SNARE_SNAP25N_23N_29N_SEC9N 84 148 IPR044766 GO:0005484|GO:0031201
Vvi1g0054 280 SMART tSNARE_6 82 149 IPR000727 -
Vvi1g0054 280 SMART tSNARE_6 210 277 IPR000727 -
Vvi1g0054 280 SUPERFAMILY SNARE fusion complex 77 147 - -
Vvi1g0054 280 Gene3D - 73 151 - -
Vvi1g0054 280 MobiDBLite consensus disorder prediction 159 209 - -
Vvi1g0054 280 Gene3D - 213 278 - -
Vvi1g0054 280 FunFam SNAP25 homologous protein SNAP33 73 150 - -
Vvi1g0054 280 CDD SNARE_Qc 218 276 - -
Vvi1g0054 280 FunFam SNAP25 homologous protein SNAP33 212 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0054 Vvi-Chr1 593761 595392 Dispersed