Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0053 ATGGCGTTGGCATCCTTTTCACCTTCACTTGTCATGCCACCCCCAACCCTCCATTTCCAACCCACTTCAGATCCTCCATACAAACTTCTCCAAAACCACCCGTCTCTCACTCTTCTCTCCACTTGCAAGAGCTTTCAAAACCTCAAGCAAATCCACTCCCAAATCATTAAGACTGGTCTCCACAATACCCAATTCGCCTTAAGCAAGCTCATTGAGTTTTGTGCCATTTCTCCATTTGGCAACCTTTCCTATGCTCTGTTACTATTTGAGTCCATTGAGCAGCCCAATCAATTCATTTGGAACACCATGATTCGTGGGAACTCATTGAGCTCCTCCCCAGTGGGTGCCATAGATTTCTATGTTCGTATGCTTTTGTGTGGGGTTGAACCCAATTCTTATACTTTTCCTTTCCTGTTGAAGTCTTGTGCAAAAGTTGGAGCTACCCAAGAAGGGAAACAGATCCATGGCCATGTTTTGAAGCTTGGACTTGAGTCTGATCCCTTTGTGCATACTTCACTCATTAATATGTATGCCCAGAATGGTGAATTGGGCTATGCTGAATTGGTATTCAGTAAGAGTTCTCTTCGAGATGCGGTTTCTTTTACTGCCCTGATCACGGGTTATACTTTGCGGGGTTGTTTGGATGATGCAAGACGGCTTTTTGAAGAAATTCCAGTGAGAGATGCAGTGTCTTGGAATGCTATGATTGCTGGGTATGCCCAAAGTGGTCGATTTGAAGAGGCATTGGCGTTCTTTCAAGAGATGAAAAGAGCCAATGTTGCACCAAATGAGAGCACAATGGTAACTGTCCTTTCAGCTTGTGCTCAGTCTGGTTCTCTTGAATTGGGCAATTGGGTTCGGTCTTGGATTGAAGACCATGGACTTGGTTCGAATCTTCGTCTTGTTAACGCTCTTATTGACATGTACTCAAAGTGTGGTGATTTGGACAAAGCTAGGGATTTGTTTGAGGGGATATGTGAAAAGGATATAATCTCCTGGAATGTTATGATAGGTGGTTATTCTCATATGAACAGCTATAAAGAGGCCTTGGCTCTCTTTCGGAAAATGCAGCAATCAAATGTAGAGCCTAATGATGTCACTTTCGTAAGCATTCTTCCTGCTTGTGCTTACTTGGGTGCTCTTGATCTTGGTAAATGGATTCATGCTTATATAGACAAAAAATTTCTAGGTTTAACCAATACCTCCCTTTGGACGAGTCTCATCGATATGTATGCAAAATGTGGAAATATAGAGGCTGCAAAACAAGTCTTTGCTGGTATGAAACCTAAAAGCTTGGGTTCTTGGAATGCAATGATATCAGGACTAGCTATGCATGGGCATGCAAATATGGCCCTTGAGCTTTTCAGACAAATGAGAGATGAAGGATTCGAACCAGATGATATCACTTTTGTTGGTGTTTTATCAGCTTGCAGCCATGCTGGTTTGGTAGAACTCGGTCGTCAATGTTTTAGCTCAATGGTTGAAGATTATGACATTTCACCAAAACTGCAACACTATGGCTGTATGATAGATCTACTAGGCCGAGCAGGGCTATTTGATGAAGCAGAAGCCCTGATGAAGAACATGGAGATGAAGCCAGATGGTGCTATATGGGGTTCTCTACTTGGAGCTTGCAGGGTCCATGGAAATGTAGAGTTGGGGGAATTTGCTGCTAAACACCTTTTTGAATTAGAGCCTGAAAACCCTGGGGCGTATGTGCTTTTATCAAACATTTATGCAACCGCTGGTAGATGGGATGATGTAGCAAGAATAAGAACCAAGCTGAACGATAAGGGGATGAAGAAGGTCCCTGGATGTAGCTCAATTGAGGTGGATAGTGTTGTTCACGAGTTTCTTGTTGGTGACAAAGTACATGAACAGAGCCAAGACATATATAAGATGTTGGATGAAATAGATCAGCTTTTGGAGAAAGCCGGGCATGTGCCTGATACATCTGAGGTGCTCTATGACATGGATGAGGAGTGGAAAGAAGGGTCCTTGAGTCATCATAGTGAGAAGTTGGCCATTGCCTTTGGGCTGATTAGTACAAAGCCAGAGACTACTATCAGGATAGTGAAGAATCTTCGTGTATGTGGAAATTGTCATTCAGCAATAAAGCTGATAAGCAAGATATTCAACAGAGAGATTATTGCTAGAGATCGGAACCGTTTTCACCATTTCAAAGATGGTTCTTGTTCATGTATGGACTATTGGTGA 2217 0.4272 MALASFSPSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0053 738 NCBIfam pentatricopeptide repeat 230 264 IPR002885 -
Vvi1g0053 738 NCBIfam pentatricopeptide repeat 331 364 IPR002885 -
Vvi1g0053 738 NCBIfam pentatricopeptide repeat 506 530 IPR002885 -
Vvi1g0053 738 NCBIfam pentatricopeptide repeat 403 428 IPR002885 -
Vvi1g0053 738 NCBIfam pentatricopeptide repeat 303 330 IPR002885 -
Vvi1g0053 738 NCBIfam pentatricopeptide repeat 434 466 IPR002885 -
Vvi1g0053 738 FunFam Pentatricopeptide repeat-containing protein mitochondrial 386 494 - -
Vvi1g0053 738 Pfam PPR repeat family 328 375 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat family 228 275 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat family 434 478 IPR002885 -
Vvi1g0053 738 Pfam E motif 548 610 IPR046848 -
Vvi1g0053 738 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Vvi1g0053 738 Gene3D Tetratricopeptide repeat domain 33 194 IPR011990 GO:0005515
Vvi1g0053 738 Gene3D Tetratricopeptide repeat domain 404 662 IPR011990 GO:0005515
Vvi1g0053 738 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 328 675 IPR046960 GO:0003723|GO:0009451
Vvi1g0053 738 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 430 IPR002885 -
Vvi1g0053 738 FunFam Pentatricopeptide repeat-containing protein 292 385 - -
Vvi1g0053 738 FunFam Pentatricopeptide repeat-containing protein At3g47530 495 674 - -
Vvi1g0053 738 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 328 IPR002885 -
Vvi1g0053 738 FunFam Pentatricopeptide repeat-containing protein 196 291 - -
Vvi1g0053 738 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat 199 224 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat 403 428 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat 99 128 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat 506 531 IPR002885 -
Vvi1g0053 738 Pfam PPR repeat 170 191 IPR002885 -
Vvi1g0053 738 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 227 IPR002885 -
Vvi1g0053 738 FunFam Pentatricopeptide repeat-containing protein At5g66520 35 195 - -
Vvi1g0053 738 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vvi1g0053 738 Pfam DYW family of nucleic acid deaminases 646 738 IPR032867 GO:0008270
Vvi1g0053 738 SUPERFAMILY TPR-like 309 587 IPR011990 GO:0005515
Vvi1g0053 738 Gene3D Tetratricopeptide repeat domain 195 289 IPR011990 GO:0005515
Vvi1g0053 738 Gene3D Tetratricopeptide repeat domain 290 399 IPR011990 GO:0005515
Vvi1g0053 738 SUPERFAMILY TPR-like 400 579 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0053 Vvi-Chr1 590563 592779 Dispersed/Proximal