Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0050 ATGATCAAAGCTTTCGTACTCAAGGGCAAACTGATCAACACCATTCAGATTTACTCCCAGATGCTGGAAAATGGGCTGTACCCTGACAACTACACCCTTCCTTATGTGTTGAAGGCCTGTGCAGGGCTGCAGAGCTGTCATCTAGGAGAATCGGCTCATGGGCAGAGTGTGAAGCTGGGGTTTTGGTTTGATATTTTTGTGGGTAACACTTTGATTGCCATGTACTCATCATTTGGAAATGTGAGGGCAGCAAGATGCATATTTGATGAAATGCCTTGGCACACTGCTGTGTCATGGACAGTCATGATTTCTGGGTATGCAAAGGTGGGTGATGTTGAGACAGCAAGAATGCTTTTTGATGAAGCACCCATGAAGGATAGAGGAATATGGGGTTCAATCATATCTGGGTATGTGCAGAACAATTGTTTTAAGGAGGGTTTGCAGATGTTCCGTTTGATGCAGTCCACAGGGTTGGAGCCTGATGAGGCCATTCTTGTGAGCATTCTATGTGCTTGTGCCCATTTAGGAGCTATGGAAATTGGGGTTTGGGTCCATAGATATTTGGACCAATTGGGTCATCCACTGAGTGTGAGATTGAGCACTGGTCTGATAGACATGTATGCTAAATGTGGGAGTTTGGATATAGCCAAGAAACTGTTTGACGGAATGTCGCAAAGGGATACAATTTGTTGGAATGCCATGATTTCAGGGATGGCAATGAATGGAGATGGAGACAATGCACTTAGGCTGTTTTCAGAGATGGAGAAGGCTGGTGTCAAGCCTGATGATATCACCTTCATTGCCATTTTTACTGCTTGTAGTTATTCAGGCATGGCACATGAAGCTATAAGGCTGTTAAATAGCATGTGTACAGTATACAATATGGAGCCCAAGAGCGAGCATTATGGGTGTATAGTTGACCTTCTTGGCCGAGCTGGGCTCCTGAAAGAAGCCAAGGAACTCATCCTCAAAATGCCTAATTCAAGCAGCCCCACGGAGCAAGCCATAGCTTGGAGGGCATTACTGAGCGCTTGTTGTAGTCATGGGCAAACAGAAGTGGCTGAGGATGCAGCACAGAGACTCTTCCATTTAGAACATCACAGTGGGGCCTATGTTCTGCTTTCAAACTTATATGCAGCTGCAGGAAAACAGGACCATGTGAGAAGAATAAGGAAGATGATGGAAAACAGAGGAGTAGACAAGGCTCCAGGTTGCAGCTCAGTCAAGATCAATGGGGTTGTTCATGAGTTTATTGCAGGGGAAGAGACACATCTGCAGATGGAAGAAGTACATAGAGTTTTGGAGAAGATGAATAAGCAGATGGGTTATTCTGGGTTCAACCCATATCCGTTTGAAGTTGATGAGACATTATGTATCCAAGCTTGA 1386 0.4488 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLEHHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVVHEFIAGEETHLQMEEVHRVLEKMNKQMGYSGFNPYPFEVDETLCIQA* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0050 461 NCBIfam pentatricopeptide repeat 229 262 IPR002885 -
Vvi1g0050 461 NCBIfam pentatricopeptide repeat 129 162 IPR002885 -
Vvi1g0050 461 NCBIfam pentatricopeptide repeat 97 121 IPR002885 -
Vvi1g0050 461 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 128 445 IPR046960 GO:0003723|GO:0009451
Vvi1g0050 461 FunFam Pentatricopeptide repeat-containing protein chloroplastic 51 194 - -
Vvi1g0050 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vvi1g0050 461 Gene3D Tetratricopeptide repeat domain 279 449 IPR011990 GO:0005515
Vvi1g0050 461 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Vvi1g0050 461 Gene3D Tetratricopeptide repeat domain 127 186 IPR011990 GO:0005515
Vvi1g0050 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Vvi1g0050 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 125 IPR002885 -
Vvi1g0050 461 FunFam Pentatricopeptide repeat-containing protein At4g33990 290 437 - -
Vvi1g0050 461 FunFam Tetratricopeptide-like helical 195 276 - -
Vvi1g0050 461 Pfam PPR repeat 129 157 IPR002885 -
Vvi1g0050 461 Pfam PPR repeat 202 226 IPR002885 -
Vvi1g0050 461 Pfam PPR repeat 97 121 IPR002885 -
Vvi1g0050 461 Pfam PPR repeat 69 92 IPR002885 -
Vvi1g0050 461 Pfam PPR repeat 301 327 IPR002885 -
Vvi1g0050 461 Pfam E motif 348 408 IPR046848 -
Vvi1g0050 461 Gene3D Tetratricopeptide repeat domain 187 278 IPR011990 GO:0005515
Vvi1g0050 461 Pfam PPR repeat family 227 273 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0050 Vvi-Chr1 572047 573432 Wgd