Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0046 ATGGCTTTGACGGCTGCTTCAGCTTCTTGCTCTCGGCTTTTGTCTTCTCTGCCCTTGTCTCCGAGGGGAATTTCAGGAAACTATGGACTACTCAGGATCAGAACAGTTGTTTCTCAGAGACCCTTTTCGCCGTTGCCGGAGATTCGGGCGTCTCCGGATCCGATTGATTTTTCCGGCAGGTGCTTGAGATTTGGCGGTTGGAATGAGATGTTGAGGAGGCGAGGCAGCAAGGGGGGAGAACTCGGGGTTCCAGCAGCTGCAGCTGCAGATGCGGATGGAGTTGTAGAGCCTGCCAAGAGCTTGTCGGAGAGATTCCCGGCGCTGGTCACCGGATCCTTTTTCATGACATGGTATTTTTCGAATATCGTCTTCAACATACTCAACAAGAAGGTTTATAATTATTTCCCGTACCCACGCTTTGTTGCTTTTATCCATCTCCTGGTGGGTGTGATCTACTGTCTTGTCTGTTGGTCTCTTGGCTTACCAAAACGTGCTCCGATCGATAAGGAGTTCCTGCTGCTCCTCACTCCTGTTGCCTTCTGCCATGCCCTTGGACATGTTATGACTAATGTATCATTTGCATCTGTGGCTGTGTCATTCACACACACTATCAAAGCCCTCGAGCCATTCTTCAATGCTGCGGCTTCTCAATTTGTTTTAGGCCACCAGATTCCCTTCCCCCTCTGGCTGTCATTGGCCCCTGTTGTTTTTGGTGTATCAATGGCATCACTCACTGAACTTTCTTTCAACTGGACTGGTTTCATCAGTGCAATGGTTGCAAATTTTGCTTTTACCTACAGAAGTTTATATTTAAAGAAAGCAATGACAGGGATGGACAGTGCAAATGTGTGCGCTTATACTGCAATGATCGCCCTTGTGTTTTGCTTCCCACCTGCACTACTTATTGATGGGCCTCAGCTGATGCAACATGGGTTCAGGGACGCTATTGCTAAAGTGGGTCTAGCTAAATTAGTGTCTGATTTATTCTGGGTTGGATTGTTTTTCCATTTGGACAATCAGCTTGCTGTCAGCACCTTGGAACGGGTTTCGCCGCTCACACATGCAGTTGGAAGTGTGTTGAAGCGAGTGGTCGTCATTGTGTTGTCTACCATTGTATTTGGTAATAAGATCACGACGCAGACTGCGATCGGTACTGCAATAGCCATTACTGGCGTTGCCATCTACTCCCTCATAAGGGCAAATATGGAGGAAGAAAACCAGAATGCTGCGGCAACTTAA 1239 0.477 MALTAASASCSRLLSSLPLSPRGISGNYGLLRIRTVVSQRPFSPLPEIRASPDPIDFSGRCLRFGGWNEMLRRRGSKGGELGVPAAAAADADGVVEPAKSLSERFPALVTGSFFMTWYFSNIVFNILNKKVYNYFPYPRFVAFIHLLVGVIYCLVCWSLGLPKRAPIDKEFLLLLTPVAFCHALGHVMTNVSFASVAVSFTHTIKALEPFFNAAASQFVLGHQIPFPLWLSLAPVVFGVSMASLTELSFNWTGFISAMVANFAFTYRSLYLKKAMTGMDSANVCAYTAMIALVFCFPPALLIDGPQLMQHGFRDAIAKVGLAKLVSDLFWVGLFFHLDNQLAVSTLERVSPLTHAVGSVLKRVVVIVLSTIVFGNKITTQTAIGTAIAITGVAIYSLIRANMEEENQNAAAT* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0046 412 Pfam Triose-phosphate Transporter family 109 396 IPR004853 -
Vvi1g0046 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 328 397 - -
Vvi1g0046 412 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 108 405 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vvi1g0046 412 PANTHER SOLUTE CARRIER FAMILY 35 110 399 - -
Vvi1g0046 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 149 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0046 Vvi-Chr1 544679 549538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0046 83 407 Antiporters AT5G46110 68.000 6.10e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0046 K15283 - vvi:100264496 747.273