Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0026 ATGTCGTCGGAATACCAGCTTTTGTTTGTACCTGATATCGGTAGGTGGTCTGTTGTGAGTGTTGAGGTAGTTGTGGGTGTTGTGTTGCTCTGTGTTGTTTTTGGCTTCTGGCTCGCTCCGGGTGGGCTGGCATGGGCTCTGGCCAAGTGCAGGGGGCGTTTCGCGATTCCGGGTCCTCCTGGTTTGCCCGTCACCGGGTTGCTTCACGTTTTCTCTGGGTCTGAGGCTCATCGTGTTCTTGCGAAGCTTGCCCGGAGATGGGACGCAGTCGGTTTGATGGCTTTCTCAGTGGGGTTGACTCGGTTTGTGGTATCGAGTGATCCGGAGACAGCCAAGGGGATTCTGAGCAGCTCGGCTTTCGCTGACCGGCCGGTGAAGGAGTCGGCGTATGAGCTTCTGTTCCACAGGGCGATGGGGTTTGCGCCCTACGGGGAATACTGGAGAAACCTGAGGAGAATATCGGCCACCCATTTGTTCAGTCCGAAGAGAATCGCTGCCTTCGAGGGTTTCAGAAGGGACATATGTCTCAAAATGGTGGATGAGATAAGGGGTTTGATGGTTGAGAATGGTGAAGTTGAGGTCAAGAAGGTTCTCCATTTTGGATCTTTGAATAATGTGATGATGACGGTGTTTGGAAGGAGCTATGATTTTGATGAAGGAGGAGTTGGGTTTGAGCTTGAAAAGCTGGTGCGTGAAGGGTATGAGCTTCTGGGTACTTTCAACTGGAGCGACCACTTTCCCCTTCTGGGTTTGTTGGATTTGCAGGGAGTGAGGAAGAGATGCAGACGTTTGGCCTCAAAGGTGAATGTGTTTGTTGGAAAGATCATAGAAGAACACAGAGCGAAAAGGGTGGGTGGACTTTCTGTAAATGGAGTTGAGGACTTTGTCGATGTTTTGCTTGATTTGGAGAAAGAAGACAAACTCACTGACTCTGACATGATTGCTGTTCTCTGGGAAATGATTTTCCGAGGAACTGACACAGTAGCAATCCTGCTGGAATGGATCCTTGCCAGAATGGTTCTCCACCCAGAAATCCAATCCAAAGCCCAATCCGAAATCGACGCCATGGTGGGAAACTCCAGACCCGTTTCGGATTCCGACATCCCCAACCTACCCTACGTCCAGTCCATTGTGAAAGAGTCTCTCAGGGTGCACCCACCAGGACCTCTACTCTCCTGGGCACGCCTCGCAACCGACGACGTCCACATCGGAGATACCCTAGTTCCGGCAGGGACAACAGCCATGGTGAACATGTGGGCCATCACCCACGACGAGAAGGTGTGGCCAGAGCCTCTTGAGTTCAAACCAGAGCGCTTCATGGACACTGATATCAGCATCATGGGCTCTGATCTGAGGCTGGCTCCATTCGGGTCTGGCAGGAGGGTCTGTCCAGGGAAATCCATGGGGTTGGCCACAGTTCACCTCTGGTTGGCTCAGCTGCTCCAAAGCTTCAAATGGGTTCCTTCCCATCATAGCGTGGACTTGTCCGAGACACTCAATCTCTCCCTTGAAATGAAGAACCCACTCATCTGCAAGGCAGTGGCTAGGGTTGCTTGA 1557 0.5209 MSSEYQLLFVPDIGRWSVVSVEVVVGVVLLCVVFGFWLAPGGLAWALAKCRGRFAIPGPPGLPVTGLLHVFSGSEAHRVLAKLARRWDAVGLMAFSVGLTRFVVSSDPETAKGILSSSAFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISATHLFSPKRIAAFEGFRRDICLKMVDEIRGLMVENGEVEVKKVLHFGSLNNVMMTVFGRSYDFDEGGVGFELEKLVREGYELLGTFNWSDHFPLLGLLDLQGVRKRCRRLASKVNVFVGKIIEEHRAKRVGGLSVNGVEDFVDVLLDLEKEDKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQSKAQSEIDAMVGNSRPVSDSDIPNLPYVQSIVKESLRVHPPGPLLSWARLATDDVHIGDTLVPAGTTAMVNMWAITHDEKVWPEPLEFKPERFMDTDISIMGSDLRLAPFGSGRRVCPGKSMGLATVHLWLAQLLQSFKWVPSHHSVDLSETLNLSLEMKNPLICKAVARVA* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0026 518 FunFam Cytochrome P450 78A5 48 516 - -
Vvi1g0026 518 Pfam Cytochrome P450 57 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 SUPERFAMILY Cytochrome P450 56 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Vvi1g0026 518 CDD CYP78 92 509 - -
Vvi1g0026 518 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 Gene3D Cytochrome P450 48 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PANTHER CYTOCHROME P450 78A7-RELATED 20 516 - -
Vvi1g0026 518 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0026 518 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0026 Vvi-Chr1 381267 382921 Dispersed/Wgd