Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0024 ATGGATCCATCGCTCACCCCCTCTCGCCGGACCAGGCCGGCTGTGCCCAAATCCGACATATACTCCACCTTCGTCGTCCACGACGACGAAGACGACGACGAAACCGCGTTCCAGGAAAAATATTCCCGCCGGAGAACGAAATCCCAAGAGAAAGAAGATATCTATGCAACAATGGTCTACAAGGACGATCCTAACGATGACGACGACGATGATTCATCTCTTCCTCCGCTTCTCAAGCGCCTTCCCAAGGACTTCGATGCTGCACATGACTACTACGACGAGGACTCCACCGGCACCGGAGATTTCGGAACCATGATAGTCAAGACCAGTCGCGATCGCTTGTCTCCGTCGATATTGTCTCCTTCGATACTGTCTCCGGCGAAGCCTCGTGGTTCGCCCTACTTGGAGCGGAGCACCGGGAAGAGGACGGACGATGAAGACAACTACTCGACTTTCGTGGTGAGATCTACGTTGGGGACTCGTGAGAGTGGGACTGTTGTTCGGAGGGGCAGCGGCGGTGCTAGTGCATCGTCGACAATGAGTAGGGCGGTGGCGAGTATGCAGGCGTCGGGAGAGTTAGGGTTCAGAAAGCATAGAAAGGGAAGCGGCTCTTCTCAAGGGGACGAAGCCCGATTTCAGGCAAGCAAGATTTCGACCAGCTCGATTCCAGAAAGCATGACAAGGGAAGATCCTTCGACTAAGTACGAATTGCTCAATGAACTAGGGAAAGGTTCATATGGGGCTGTTTACAAAGCTCGGGACATTAGAACGTCAGAGCTGGTTGCCATTAAAGTTATTTCATTATGTGAGGGGGAAGAAGGATATGAAGAAATACGTGGTGAAATTGAGATGTTGCAGCAATGTAGTCATCCAAATGTTGTCCGCTACCTTGGAAGTTACCAAGGAGAAGAGTACCTTTGGATAGTAATGGAGTACTGTGGGGGTGGAAGTGTTGCTGACTTGATGAATACCACTGAGGAGCCCTTGGATGAGTATCAAATAGCATATATTTGCAGGGAAGCATTGAAGGGTCTATCTTATTTGCACTCAATTTTCAAAGTTCATAGAGATATTAAGGGCGGTAATATCCTGCTGACTGAGCAAGGAGAGGTCAAGTTGGGTGATTTTGGGGTTGCAGCGCAGCTTACAAGGACCATGTCAAAGCGTAACACGTTCATTGGCACTCCTCATTGGATGGCTCCAGAAGTTATTCAGGAGAGTCGTTATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTGTCTGCAATTGAGATGGCAGAGGGGCTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTCTTGTTCATGATATCTATTGAGCCAGCTCCAATGCTTGAGGATAAAGAGAAATGGTCTCTTGTGTTCCATGATTTTGTTGCAAAGTGCCTTACAAAAGAACCCCGTCTTCGGCCTACTGCATCTGAGATGCTAAAGCACAAATTCATAGAGAAATGCAAATGTGGAGCTTCTGCAATGTTACCAAAGATTGAAAAGGCGAGGCAAATTCGGGCCTCGATGGCGCTGCAAGCACAAAGTCTGGCTCGAATCACCTCTATATCAGGAGATGCTCCTCCGGAAGGTCCAAAATTGAATGAGGATTATGGAGATACAGTTCCATCAAGGCCTTTCAACAATGGACTTCAAGTTACAAATGAGGTACCCACAGCTAGTACTTTGGTGAAGCAGAAGATATCTGATGGTGTGGAACTAGAAGGAGAAGGTGAGTTTGGGACTGTAATAGTTCATGGTGGGTTTGAGATGGATAAAACCGCCAATCAAACACCTGTTTCCAGTACAAAAGAACCCTCAGCTGCTCATGAAAATGTTGAGAGCCATCCTGTTGGTGGCCCTGGAATCAAATCAACTAACAACTGGGTGGAGGATACAGTTGATGTTGCTGCAAACAATGACCAGGTTGGAGAATCACATCCAGGGGAACAAACAACATCCAAATCAGTATTTGGCTCTCCTGAGCAGAATCTCAGGACAAGTAGCATTTCTCAGGTGCAAGCTGGAGGTGGTGGTGTGAGCAGTAGCCAATTAAAGAATGAAACAGTCAGTAGGACAGCCTTTGCATCACAAGATAAGCTTTGGTCCATATATGCAGCTGGTAACACAGTACCCATTCCATTCTTGAGGGCAACTGATATATCTCCAATTGCTCTTTTGTCTGGCAATGTTCTTGGAGGAAGGCAACGAGAAAGTAGTGGAGCTGTTGCCGTGGAAGCGGTGCAGGAGCTTTTTACTGGTGATAGTCAGCTCAAGAAGGGTAGAAGGGGACAAAATGAGATTCCCCTTCCTCCAAGCATGTACCAGAGGCTCACTTCAAGCTCTACGCTATTGAATCTGGCACAAGCTTTGGCTTACCACAAAACGAGTTATGAAGAGATGCCACTCCAGGATCTGCAAGCAGTACAAGAGCAACAGACTATTCAAAACCTTTGTGATACACTTCGAACTATTCTGCGGCTGTAG 2496 0.4772 MDPSLTPSRRTRPAVPKSDIYSTFVVHDDEDDDETAFQEKYSRRRTKSQEKEDIYATMVYKDDPNDDDDDDSSLPPLLKRLPKDFDAAHDYYDEDSTGTGDFGTMIVKTSRDRLSPSILSPSILSPAKPRGSPYLERSTGKRTDDEDNYSTFVVRSTLGTRESGTVVRRGSGGASASSTMSRAVASMQASGELGFRKHRKGSGSSQGDEARFQASKISTSSIPESMTREDPSTKYELLNELGKGSYGAVYKARDIRTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNTTEEPLDEYQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKEPRLRPTASEMLKHKFIEKCKCGASAMLPKIEKARQIRASMALQAQSLARITSISGDAPPEGPKLNEDYGDTVPSRPFNNGLQVTNEVPTASTLVKQKISDGVELEGEGEFGTVIVHGGFEMDKTANQTPVSSTKEPSAAHENVESHPVGGPGIKSTNNWVEDTVDVAANNDQVGESHPGEQTTSKSVFGSPEQNLRTSSISQVQAGGGGVSSSQLKNETVSRTAFASQDKLWSIYAAGNTVPIPFLRATDISPIALLSGNVLGGRQRESSGAVAVEAVQELFTGDSQLKKGRRGQNEIPLPPSMYQRLTSSSTLLNLAQALAYHKTSYEEMPLQDLQAVQEQQTIQNLCDTLRTILRL* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0024 831 MobiDBLite consensus disorder prediction 597 626 - -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 643 691 - -
Vvi1g0024 831 SUPERFAMILY Protein kinase-like (PK-like) 234 490 IPR011009 -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 116 146 - -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 206 228 - -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 195 231 - -
Vvi1g0024 831 Gene3D Transferase(Phosphotransferase) domain 1 231 522 - -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 597 611 - -
Vvi1g0024 831 ProSitePatterns Protein kinases ATP-binding region signature. 241 264 IPR017441 GO:0005524
Vvi1g0024 831 FunFam serine/threonine-protein kinase dst1 isoform X1 232 523 - -
Vvi1g0024 831 Pfam Protein kinase domain 235 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0024 831 FunFam Aurora kinase A 227 316 - -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 36 62 - -
Vvi1g0024 831 ProSiteProfiles Protein kinase domain profile. 235 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0024 831 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 218 594 - -
Vvi1g0024 831 SMART serkin_6 235 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0024 831 MobiDBLite consensus disorder prediction 31 79 - -
Vvi1g0024 831 MobiDBLite consensus disorder prediction 647 691 - -
Vvi1g0024 831 CDD STKc_MAP4K3_like 234 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0024 Vvi-Chr1 342802 373752 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Vvi1g0024 Pkinase 1.5e-67 CL0016