Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0022 ATGGTTTCCATCGTAAGGCGCGCTATGAACAACACTGATACAAACTTGGTGCTCTTCCGCATCCTTGCTTCAATCCATGCCATCTCCATTGTCATCGCTGTCACAGCTTCATCATCACCCTACACTCCCGTGGAGAACATAGCTCTAGATTGTGGAAGCCATGGCCACAGCACCGCCCCTGATGGCCGCAAATGGACTAGTGACACCGGTTCAAAATTCATATGCTCCCAACTCAATGCATCTTCCATCTCCATGGCCTCCACCCAAGACTCCGTTCCACTGGTTCCTTACATGACTGCTCGTATCTTCACCTCCCAATTCACTTACGCCTTCCCGCTATCCCCGGGCCCCAAGTTCCTTCGCCTTCACTTCCATCCGGCCTCCTACTCCAATCTCGATCCCTCCCACGCCTTCTTCTCCGTCACGGCAAACCACTACACGCTGCTTCACAACTTCAGCGCTTGGCTCACTGCTGGCTTTCTTAATCAAACCCATTTCAGTAAGGAGTATTGTGTTTGGGTGAGCTCGGAGCAGCTGCTGAATCTCACTTTCGCTCCAGTTGCAGGTGCTTTTGCCTTTGTGAATGGCATCGAGGTTGTTTCCATGCCCACGGATCTTTACCTCAAAGGTGAAGATATCTCCATGGCTGGGCAATCGCAGCCATTCACGATCAACAATGGCACTGCACTCGAGATGGTTTATAGATTAAACGTGGACGGGCAAGCCATTTCGGCCGTCGACGACACCGGCATGTTCCGAGAATGGTCTCAGGACGACTCCTTTATCTTCGGACCCGCAGCTGGGCAAGATCCATTTCATCTCACAATTAAGATCAAATTCACCAAGGTTCCACCCTATACTGCGCCTGAGATTCTCTACAGGACTGCTCGCTCCATGGGGATGAACAGGAATGTCAACGAGAACTACAATCTGACGTGGATATTCCCCGTGGATTCAGGGTTTTACTATCTGGTGAGGCTCCATTTCTGCGAGATTGCGCCGGAGATAACTGGGATCAATCAGAGGGTGTTTGAGATATTTTTGAATAACCAGACGGCCGACGATCAGATGGATATTATGGTTTATGCCGATGGTATCGGAGTACCGATTTTCAGGGAATTCGTGGTGATAGTGCCGGAAGCAGGGGGAGTCCGCCAAGAGCTATGGCTGGCGTTGCACCCCAACACCGGAGCTCATGCCAAGTACTCCGATGCTCTTTTGAACGGTTTGGAGATATTCAAATTGAACGCAAGCGACGGAAACCTCGCCGGACCCAATCCTATCCCTAAACATAAGTCTAAAGCCGAAGTGGATCAAATTGAACCCATTCAAACGGCGGATCGTTGGAATAAGGTCCGAAAACCATTGATTTTCGCCGGAGTAGTGGTGGGCGGGGTTGTTGCCGTAGCTTTGATTTTATTTTTCTTCATTCTCCGGCGCCTGGGAGCGAAGAAGAAGGCAAGGACTGCAGGCACGAGCCGAGGAACATCCTGGTGGACTCCATTCTCGCAATCCGGCGCCGAGTCAACCAAGACGAGATATACGCCTCGGCCGTCGGAGCTGTGCAGGCATTTTTCGCTGGAGGAGATGCTTTCAGCGACGAACGACTTCAGCGACGATTTCCTCATCGGCGTCGGCGGCTTCGGAAACGTCTACAGGGGCGCCATCCACGGCGGAGCAACCCCAGTCGCGGTGAAACGATTGAACCCCACGTCCCAGCAAGGAACGCGCGAGTTCCGCACAGAAATTGAGATGCTCTCGCAGCTCCGCCACATCCACCTGGTTTCTCTAATCGGCTACTGCGCGGAACACGGGGAGATGATCCTCGTCTACGACTTCATGGCCAACGGCGCCCTCCGGGATCATCTCTACGGCACTGATAACCCTCCTCTCCCATGGAAGAAGCGGCTCGATATCTGCATTGGCGCGGCTAAGGGACTGCACCATCTGCATACAGGCGCGAAGCACACGATCATCCACAGAGACGTGAAGACCGCCAACATACTGCTTGATGAGAACTGGGTGGCGAAGGTCTCTGATTTCGGATTATCAAAGTTGGGACCCGCCGGCGGGTCCGAGAGCCACGTCAGCACCGTGGTGAAGGGCAGCTTCGGGTACATAGACCCGGAGTACTACCTCCTCCAGCGGCTGACGGATAAGTCTGACGTGTACTCATTCGGGGTGGTTCTGTTTGAGGTTCTGTGCGGCAGACCGCCGGTGGAAAAGCACCTAGAGGGGAGAGAGGCGAGCTTGGTGGAGTGGGGAAAGGCCCACTACAAGAGCGGGAGGCTTGAGGAGATCGTGGACAATCGGGTGAGGAATGAGATTGGGGCGGAGTGTCTAAGGAAGTTTGGGGAGATAGCGACAAGCTGCGTGGGGGATCGGGGGACGGAGCGGCCGGCGATGGGTGATGTGATGTGGGGGCTTGAATTCGCGATGCAGTTGCAGAAGAAGAGCGGGGAGGTAAGTGAGATAGAAGAAGGATTGGAGGGTGAAAGGAGGTGGAATGGGCATGGTGGGGGTGGGGGTGGGGGTGGAGGTGGTGGAGGTGAATCCACATTGGGGATGTCCGGAGATGTCTTCTCTGAGATCAGAAATCCCCAAGGCCGATAA 2613 0.5408 MVSIVRRAMNNTDTNLVLFRILASIHAISIVIAVTASSSPYTPVENIALDCGSHGHSTAPDGRKWTSDTGSKFICSQLNASSISMASTQDSVPLVPYMTARIFTSQFTYAFPLSPGPKFLRLHFHPASYSNLDPSHAFFSVTANHYTLLHNFSAWLTAGFLNQTHFSKEYCVWVSSEQLLNLTFAPVAGAFAFVNGIEVVSMPTDLYLKGEDISMAGQSQPFTINNGTALEMVYRLNVDGQAISAVDDTGMFREWSQDDSFIFGPAAGQDPFHLTIKIKFTKVPPYTAPEILYRTARSMGMNRNVNENYNLTWIFPVDSGFYYLVRLHFCEIAPEITGINQRVFEIFLNNQTADDQMDIMVYADGIGVPIFREFVVIVPEAGGVRQELWLALHPNTGAHAKYSDALLNGLEIFKLNASDGNLAGPNPIPKHKSKAEVDQIEPIQTADRWNKVRKPLIFAGVVVGGVVAVALILFFFILRRLGAKKKARTAGTSRGTSWWTPFSQSGAESTKTRYTPRPSELCRHFSLEEMLSATNDFSDDFLIGVGGFGNVYRGAIHGGATPVAVKRLNPTSQQGTREFRTEIEMLSQLRHIHLVSLIGYCAEHGEMILVYDFMANGALRDHLYGTDNPPLPWKKRLDICIGAAKGLHHLHTGAKHTIIHRDVKTANILLDENWVAKVSDFGLSKLGPAGGSESHVSTVVKGSFGYIDPEYYLLQRLTDKSDVYSFGVVLFEVLCGRPPVEKHLEGREASLVEWGKAHYKSGRLEEIVDNRVRNEIGAECLRKFGEIATSCVGDRGTERPAMGDVMWGLEFAMQLQKKSGEVSEIEEGLEGERRWNGHGGGGGGGGGGGGESTLGMSGDVFSEIRNPQGR* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0022 870 ProSitePatterns Protein kinases ATP-binding region signature. 543 566 IPR017441 GO:0005524
Vvi1g0022 870 MobiDBLite consensus disorder prediction 831 870 - -
Vvi1g0022 870 Gene3D Transferase(Phosphotransferase) domain 1 614 829 - -
Vvi1g0022 870 SMART serkin_6 537 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0022 870 FunFam FERONIA receptor-like kinase 46 203 - -
Vvi1g0022 870 Gene3D - 46 204 - -
Vvi1g0022 870 Gene3D - 228 417 - -
Vvi1g0022 870 ProSitePatterns Peroxidases active site signature. 116 127 IPR019794 GO:0004601
Vvi1g0022 870 PANTHER OS03G0124300 PROTEIN-RELATED 25 484 IPR046957 GO:0004672
Vvi1g0022 870 Pfam Malectin-like domain 49 414 IPR024788 -
Vvi1g0022 870 Gene3D Phosphorylase Kinase; domain 1 502 613 - -
Vvi1g0022 870 SUPERFAMILY Protein kinase-like (PK-like) 512 812 IPR011009 -
Vvi1g0022 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Vvi1g0022 870 FunFam FERONIA receptor-like kinase 228 416 - -
Vvi1g0022 870 CDD STKc_IRAK 543 805 - -
Vvi1g0022 870 FunFam Receptor-like protein kinase FERONIA 614 830 - -
Vvi1g0022 870 Pfam Protein tyrosine and serine/threonine kinase 543 805 IPR001245 GO:0004672|GO:0006468
Vvi1g0022 870 FunFam Receptor-like protein kinase FERONIA 509 613 - -
Vvi1g0022 870 ProSiteProfiles Protein kinase domain profile. 537 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0022 Vvi-Chr1 334518 337130 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi1g0022 Malectin_like 6.9e-45 CL0202