Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0017 ATGGCTGTTTTGGTGGTGATCTTTGTTTTGGTTGTGGCTTTATCTGTCTGCTTTGCTCTCTTGAAATGGAATGAGATAAGATACAGCAGGAGAGGGCTGCCTCCTGGGACGATGGGGTGGCCACTCTTTGGTGAGACTACTGACTTCATTAAACAGGGACCTGACTTCATGAAGAAGCAGAGAGCAAGGTACGGGAGCTTTTTCAAGACCCACATACTGGGCTGTCCTACCATTATTTCCATGGATCCAGAGCTCAACAGATACGTCCTTTTGAATGAAGGAAAAGGACTTGTTCCTGGCTACCCACAGTCCATGTTGGATATATTAGGGGAACACAACATTGCTGCTGTACAGGGATCGACCCACAAATATATCAGAGGGTCAATGCTATCCCTCATTGCCCCCCCCATGATCAAAGATCAGCTTCTCAGAAAGATTGATCAGGGCATGAGATTCCACCTCAGCAACTGGGATGGCAGAACCATTGATATCCAAGAAAAAACCAATGAGATGGCACTGTTCATTCCCTTCAAGTTGATCATGGAAACTGAATCAGCCTCCATCTATGAGACCTTCAAAAGGGAGTTTGATAAGCTGGTGGAAGGAACACTGTCACTGCCCATCAACATTCCTGGCACAAGTTACCATCATGGGTTCCAGGGAAGGAAGAATGTTATTAGAATGTTGAAAGGAGTTATGGAGAAGAGAAGAGCTTCTTCAATGACCCAAGATGACATGTTAGGCTACCTTCTTAGGAATGAAGGATCAAAGTATAATCTCAGTGATGAGGAGATACTTGATCAAGTAATAACAATTTTGTATTCAGGATATGAAACTGTCTCAACTACTTCCATGATGGCCGTCAAATATCTGCTTGATAATCCGAGAGCTCTTCAACAACTTAGAGAAGAGCATTTAGCGATTCGACAAAGAAAAAATCCAGAGGATCCAATTGACTGGAACGATTACAAGTCCATGAACTTTACTCGAGCCGTGATCTTTGAAACCTCGAGGTTGGCCACAGTCGTGAATGGGGTGCTGAGGAAGACAACAAAAGAAATGGAGTTGAATGGATTTGTGATTCCTAGAGGGTGGAGGATATATGTTTACACAAGGGAGATCAACTATGATCCTTTCCTCTATCCAGAGCCATATACCTTCAATCCATGGAGATGGCTGGACAACAGCTTGGAATCTCACAATTACTGCTTCACATTTGGAGGTGGAACCAGGCTCTGTCCCGGAAAAGAATTGGGCATAGTTCAGATTTCTACATTCCTTCACTACTTCCTTACTAGTTATAGGTGGGAAGAAGTGGGGAGTAACAAGATTGTGAAATTCCCAAGAGTAGAGGCACCAAATGGCCTGCATATAAGGGTGTCCAAGTACTAA 1392 0.4375 MAVLVVIFVLVVALSVCFALLKWNEIRYSRRGLPPGTMGWPLFGETTDFIKQGPDFMKKQRARYGSFFKTHILGCPTIISMDPELNRYVLLNEGKGLVPGYPQSMLDILGEHNIAAVQGSTHKYIRGSMLSLIAPPMIKDQLLRKIDQGMRFHLSNWDGRTIDIQEKTNEMALFIPFKLIMETESASIYETFKREFDKLVEGTLSLPINIPGTSYHHGFQGRKNVIRMLKGVMEKRRASSMTQDDMLGYLLRNEGSKYNLSDEEILDQVITILYSGYETVSTTSMMAVKYLLDNPRALQQLREEHLAIRQRKNPEDPIDWNDYKSMNFTRAVIFETSRLATVVNGVLRKTTKEMELNGFVIPRGWRIYVYTREINYDPFLYPEPYTFNPWRWLDNSLESHNYCFTFGGGTRLCPGKELGIVQISTFLHYFLTSYRWEEVGSNKIVKFPRVEAPNGLHIRVSKY* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0017 463 PANTHER CYTOCHROME P450 26 31 441 - -
Vvi1g0017 463 FunFam Cytochrome P450 85A1 24 462 - -
Vvi1g0017 463 Pfam Cytochrome P450 34 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS P450 superfamily signature 404 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS P450 superfamily signature 275 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS E-class P450 group I signature 330 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS E-class P450 group I signature 370 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS E-class P450 group I signature 264 281 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 SUPERFAMILY Cytochrome P450 27 460 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 CDD CYP90-like 60 462 - -
Vvi1g0017 463 Gene3D Cytochrome P450 24 462 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g0017 463 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0017 Vvi-Chr1 284363 287452 Dispersed/Tandem