Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0013 ATGGATTTGGTTCCACCATCTGAGCATCTTTGCTACGTCCGGTGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATTCCATGCAAACGGCTGTTGGACACTGTGACAGTGAAATGTGGCCACTGCAGTAACCTCTCCTTTCTTAGCACCAGACCTCCACTGCAGGGCCAATGCCTTGACCATCAAATGAGCCTTCAGGGTGTTTGCAATGATTTCAGAAAGGGCCAGTCCTCATCATCATCTTCATCAACATCCAGCGAGCCAGTGTCCCCAAAAGCACCCTTTGTTGTAAAACCACCCGAAAAAAAACACAGACTCCCATCTGCTTACAATCGATTTATGAAGGAGGAAATACAACGCATCAAAGTAGCCAATCCTGAGATACCCCATCGAGAGGCTTTCAGTGCAGCAGCGAAAAATTGGGCTAGGTACATCCCAAATTCACCAGCAGGCTCAGTTTCTGAGAGCAGTAACAATGAATGA 483 0.4741 MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLDHQMSLQGVCNDFRKGQSSSSSSSTSSEPVSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKVANPEIPHREAFSAAAKNWARYIPNSPAGSVSESSNNE* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0013 160 CDD HMG-box_SF 105 141 - -
Vvi1g0013 160 MobiDBLite consensus disorder prediction 71 103 - -
Vvi1g0013 160 PANTHER PROTEIN YABBY 6-RELATED 6 158 IPR006780 GO:0007275
Vvi1g0013 160 SUPERFAMILY HMG-box 88 142 IPR036910 -
Vvi1g0013 160 Gene3D High mobility group box domain 80 148 IPR036910 -
Vvi1g0013 160 Pfam YABBY protein 6 144 IPR006780 GO:0007275
Vvi1g0013 160 MobiDBLite consensus disorder prediction 71 90 - -
Vvi1g0013 160 FunFam Protein CRABS CLAW 79 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0013 Vvi-Chr1 237562 239273 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi1g0013 YABBY 1.2e-51 CL0114