Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0010 ATGGGAAGAGGGAAGGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGACAGGTGACATTTGCAAAAAGAAGGAATGGACTGCTGAAGAAGGCCTATGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCGCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCGGCTCTAGCATGCCAGAGACACTTGAGAGGTATCAAAGATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAACGAACTCAGAGAAATTTTCTGGGGGAAGATTTGGGGCATTTGGGTACAAAGGAGCTTGAGCAGCTTGAGCATCAGCTGGACAAGTCATTGAAGCAAATCAGATCAACAAAGACCCAATTTATGCTTGATCAACTGTCTGATCTTCAAAGAAAGGAACAAATCCTAATGGAAGCCAACAACGCCTTAAGGAGGAAGTTGGGTGAAAGCAGTGCAGAAAGTGGCCTGGGATCAACATGGGAAGCTGCCGCACATAATCTACCATATAATCGCGAGCCTGTTCAGTCAGAGGACTTTTTCGAGCCTCTGCAATGCGATAGCACTTTGCAGATTGGTTACAATCCTGTGCTGCGGGTTGAGATGAACGGAGCCAGCACAACACAAAATGTCAATGGATTCATCCCTGGGTGGATGGTTTGA 732 0.4645 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMPETLERYQRCSYSALEASQPAKETQNSYQEYLKLKSKVEVLQRTQRNFLGEDLGHLGTKELEQLEHQLDKSLKQIRSTKTQFMLDQLSDLQRKEQILMEANNALRRKLGESSAESGLGSTWEAAAHNLPYNREPVQSEDFFEPLQCDSTLQIGYNPVLRVEMNGASTTQNVNGFIPGWMV* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0010 243 Coils Coil 150 173 - -
Vvi1g0010 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g0010 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g0010 243 Coils Coil 124 144 - -
Vvi1g0010 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi1g0010 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vvi1g0010 243 FunFam MADS-box transcription factor 1 13 89 - -
Vvi1g0010 243 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vvi1g0010 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g0010 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0010 Vvi-Chr1 194371 206245 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi1g0010 K-box 6.3e-30 No_clan