Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0009 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGCATAGAGAACAAGATCAATCGCCAAGTCACCTTCTCCAAGAGGAGGACTGGGTTGCTGAAGAAAGCTCATGAGATCTCGGTCTTGTGTGATGCAGAGGTTGCTTTGATTGTCTTCTCCACTAAAGGAAAGCTGTTTGAGTACTCAACTGATTCTTGCATGGAGAAGATCCTTGATCGCTATGAAAGATATTCTTATGCAGAGAGGCAGCTGACTGCAACTGATCCTGAATCACAGGGAAACTGGTCCCTTGAGTACTCCAAACTTAAGGCAAAGATTGAGCTTTTACAAAGAAGCCAAAGGCACTTTTTGGGGGAAGATCTGGATTCACTGAGTCTGAAAGAGCTCCAAAATTTGGAACAGCAGCTTGATACCGCTCTTAAACACATTCGATCAAGAAAAAACCAGCTAATGTATGAGTCAATTTCTGAACTTCAGAGGAAGGAAAAGGCAATGCAGGAGCAAAATAACATGCTAGCTAAGGAGATCAAGGAGAAGGAGAAGACTGTGGCACAGCAGACACATTGGGAGCAGCAAAACCATGGTCTTAATACATCATCCTTCCTACTGCCACAGCAGCTTCCCTGTCTAAACATGGGTGGGACTTACCAGGGAGAAGCACATGGAGCAAGGAGGAATGAGCTGGACCTTACGCTTGAACCAATATATCCCTCCCACCTTGGATGCTTCACGACGTGA 726 0.4559 MGRGRVQLKRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILDRYERYSYAERQLTATDPESQGNWSLEYSKLKAKIELLQRSQRHFLGEDLDSLSLKELQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAMQEQNNMLAKEIKEKEKTVAQQTHWEQQNHGLNTSSFLLPQQLPCLNMGGTYQGEAHGARRNELDLTLEPIYPSHLGCFTT* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0009 241 Coils Coil 122 145 - -
Vvi1g0009 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vvi1g0009 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g0009 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g0009 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vvi1g0009 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g0009 241 Coils Coil 151 178 - -
Vvi1g0009 241 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g0009 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vvi1g0009 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g0009 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g0009 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vvi1g0009 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vvi1g0009 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g0009 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g0009 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0009 Vvi-Chr1 150565 175325 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi1g0009 K-box 7.7e-32 No_clan