Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0008 | ATGGGTTGTGTTTCTTCCTGTTTCGGCCCGAGGGATTGGGAAGATAACCAAGACAGGTCCATCCACACAAACCGCACCTGTCCCGGTGCCTTCATTCCCAACTTTCTCAACAAGATTCTGAACCACACGGGAGAAGCAATATTCAGGCGGGCCTGGAACTTGTTAGCGGGGGAGGCACACTCAGTAGGTCTTACTGTGAAGGGGGATCAAGAAAATGCTATTCTGAGTCCACTAGTGGAGCCATCAACAGCAGAAGTGGCCGGTAGAATTGAGTGTATCTCTACATCATCAGAAGATGAGGATGTCTGTCCCACATGCCTTGAAGATTACACTCCTGAAAATCCTAAGATAGTTACACAATGTTCTCATCATTTCCACCTTGGTTGTATATATGAGTGGTTGGAGAGAAGCCAAACCTGTCCAGTTTGTAGTAAGGTAACTAGTTTCTATTATACATCTTCTGATTTCATTCTAAATATTATACTTTTTCAGTTGGTATCTTAG | 504 | 0.4405 | MGCVSSCFGPRDWEDNQDRSIHTNRTCPGAFIPNFLNKILNHTGEAIFRRAWNLLAGEAHSVGLTVKGDQENAILSPLVEPSTAEVAGRIECISTSSEDEDVCPTCLEDYTPENPKIVTQCSHHFHLGCIYEWLERSQTCPVCSKVTSFYYTSSDFILNIILFQLVS* | 168 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0008 | 167 | CDD | RING-H2_AIRP1-like | 99 | 146 | - | - | |
| Vvi1g0008 | 167 | SMART | ring_2 | 103 | 143 | IPR001841 | - | |
| Vvi1g0008 | 167 | Pfam | Ring finger domain | 102 | 143 | IPR001841 | - | |
| Vvi1g0008 | 167 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 144 | IPR001841 | - | |
| Vvi1g0008 | 167 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 73 | 149 | - | - | |
| Vvi1g0008 | 167 | SUPERFAMILY | RING/U-box | 97 | 150 | - | - | |
| Vvi1g0008 | 167 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 156 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0008 | Vvi-Chr1 | 116646 | 118695 | Dispersed |