Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0002 ATGGATGATGAGTATGAGAAACTTATTCGAAGAATGAACCCACCAAGGGTTGTAATTGATAATGAAACCTGCAAGAATGCTAGTGTGATACGGGTGGACAGTGCAAACAAACATGGAATACTTCTCGAAGTTGTACAAGTCCTTATTGATCTTAACCTTATTATAACTAAAGCTTATATATCTTCTGATGGTGGATGGTTCATGGATGTCTTTAATGTTACTGATCAAGATGGAAACAAGATTACAGATGAAGAGATTTTAGATTATATCCAAAAGTCACTGGGTTCGGATGCATGCTTCATATCTTCAATGAGAAGATCTGTTGGTGTTATACCTTCCACAGACCACACTTCAATTGAGTTGACTGGAAGTGACAGGCCAGGACTACTTTCAGAGGTGAGTGCTGTCCTAACCCACCTAAAATGCAGTGTGGTGAATGCTGAGGTTTGGACCCACAACACCCGGGCTGCAGCCGTGATGCACGTAACGGATGAGGAAACTGGCTGTGCTATTACTGACCCTGAAAGACTCTCTAAGGTCAAGCAACTTCTGTGCAATGTACTTAAGGGCAGCAATAAATCAAGGGAAGCTAAGACTGTGGTCTCTCATGGGGTCACCCACACTGAGAGGAGGCTTCACCAGATGATGTTTGCTGATCGGGACTATGAAAGAATCTATAATGATGGCTCAGATGAGGCCCAAAGACCAAATGTGAATGTTGTTAATTGGTATGACAAAGATTATTCGGTGGTCACTATCAGGAGTAAGGATCGGCCAAAGCTTCTCTTTGATACTGTTTGCACTTTGACTGACATGCAATATGTGGTTTTCCATGCAAATGTTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGGTCTCCTGTGAAATCAGATGCGGAGAGACAGAGAGTGATTCAATGTCTTGAAGCAGCCATTGAGAGAAGAGTATCTGAGGGATTGAAGCTTGAATTGTGCACTACGGACAGAGTTGGGCTGCTATCTGATGTCACTCGCATCTTCCGTGAGAATAGCCTCTCAGTCACCAGGGCTGAAGTTACAACTAGAGCAGGCAAAGCTGTTAATACATTCCATGTTCGTGATGCATCCGGTTATCCTGTTGATGCTAAGACTATTGATTCCATCCGGGAAGCAATTGGCCAGACTATCCTCCAAGTGAAAGGCAGCCCTGAAGAGATAAAACAAATTCCTCAAGAATCTCCAACCAGATTCCTCCTTGTGGGTCTCTTCAGGTCCAGATAA 1281 0.4348 MDDEYEKLIRRMNPPRVVIDNETCKNASVIRVDSANKHGILLEVVQVLIDLNLIITKAYISSDGGWFMDVFNVTDQDGNKITDEEILDYIQKSLGSDACFISSMRRSVGVIPSTDHTSIELTGSDRPGLLSEVSAVLTHLKCSVVNAEVWTHNTRAAAVMHVTDEETGCAITDPERLSKVKQLLCNVLKGSNKSREAKTVVSHGVTHTERRLHQMMFADRDYERIYNDGSDEAQRPNVNVVNWYDKDYSVVTIRSKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVKSDAERQRVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVTRAEVTTRAGKAVNTFHVRDASGYPVDAKTIDSIREAIGQTILQVKGSPEEIKQIPQESPTRFLLVGLFRSR* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0002 426 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 401 IPR040217 -
Vvi1g0002 426 SUPERFAMILY ACT-like 324 394 IPR045865 -
Vvi1g0002 426 CDD ACT_ACR_3 248 322 - -
Vvi1g0002 426 CDD ACT_ACR_1 27 98 - -
Vvi1g0002 426 ProSiteProfiles ACT domain profile. 328 408 IPR002912 -
Vvi1g0002 426 SUPERFAMILY ACT-like 24 92 IPR045865 -
Vvi1g0002 426 SUPERFAMILY ACT-like 113 188 IPR045865 -
Vvi1g0002 426 Pfam ACT domain 117 166 IPR002912 -
Vvi1g0002 426 Pfam ACT domain 334 388 IPR002912 -
Vvi1g0002 426 Gene3D - 116 189 - -
Vvi1g0002 426 CDD ACT_ACR_2 117 190 - -
Vvi1g0002 426 ProSiteProfiles ACT domain profile. 29 106 IPR002912 -
Vvi1g0002 426 ProSiteProfiles ACT domain profile. 118 202 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0002 Vvi-Chr1 33171 35791 Dispersed/Transposed