Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1411 ATGTTCCATCACAAGAAGCCTTCTACTATGAATTCTCACGATAGACCCATGTGTGTTCAAGGTGACTCTGGCCTTGTCCTCACCACCGACCCAAAGCCCCGCCTCCGGTGGACTGTTGAGCTCCATGAACGCTTTGTTGATGCTGTCACTCAGCTTGGAGGACCTGATAAGGCCACCCCGAAGACCATCATGAGAGTCATGGGTGTAAAAGGTCTCACTCTTTACCATCTCAAGAGCCATCTCCAGAAATTCAGGCTTGGAAAGCAGCCACACAAGGAATTCAATGATCACTCAATTAAGGATGCTTCAGCATTAGAACTTCAAAGAAACATTGCATCTTCATCTGGGGTGATGAGCCGCAATACCAACGATAACACACATATAACTGATGCGATTAGGATGCAAATGGAGGTGCAAAGAAGGCTTCACGAACAACTGGAGGTCCAAAGACACCTCCAGTTGAGAATTGAAGCTCAAGGGAAGTACATGCAGACTATACTGGAGAAAGCTTGCCAGACACTTGCAGGTGAAAACATGGCTTTGGGAAACTACAAGGGTATCGGAAATCAAGGAGTTCCTGACATGGGAGCGATGAAGGATTTCGGTTCTTCCTTGAACTTTCCATCTCTTCAAGACCTAAACATTTATGGAGGTGACCAGCTTGACCTTCAACAAAGCATGGACAGATCACTTGATGGCTTCATACAGAATACTGAGAACATGTGTTTGGGAAAGAAGAGGCCTAGCCCTTATAGTGGTAGTGGCAAGAACCCTCTAATCTGGTCTGATGATCTTCGGATGCAAGAACTGGGAACAGCAGCATCCTGTCTAGGCTCTCAAGATGATCCATTCAAGGGTGATCAAATTCAAATTGCACCACCATCAATGGATAGAGGAGCTGATATGGATTCCATATCCGACATTTATGAAACAAAGCCAATTCTCTCTGGTGATCCTATGGGAGAAAAGAAATTTGATGGGTCGGGGTCGGCAAAGCTTGGAAGGCCATCGCCACGTAGAGCACCACTTCCCACAGATAGGATGAATCCCATGATCAATGCTGGTGCCATGCCACAAGGAAGAAGTTCATACGGGTGA 1098 0.4636 MFHHKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVMSRNTNDNTHITDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLAGENMALGNYKGIGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLDLQQSMDRSLDGFIQNTENMCLGKKRPSPYSGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIAPPSMDRGADMDSISDIYETKPILSGDPMGEKKFDGSGSAKLGRPSPRRAPLPTDRMNPMINAGAMPQGRSSYG* 366
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1411 365 Gene3D - 31 89 - -
Vvi19g1411 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 209 IPR044848 GO:0003700
Vvi19g1411 365 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Vvi19g1411 365 Pfam MYB-CC type transfactor, LHEQLE motif 127 173 IPR025756 -
Vvi19g1411 365 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Vvi19g1411 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Vvi19g1411 365 FunFam Myb family transcription factor 31 89 - -
Vvi19g1411 365 MobiDBLite consensus disorder prediction 312 365 - -
Vvi19g1411 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi19g1411 Vvi-Chr19 23388302 23390037 Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi19g1411 Myb_DNA-binding 2e-06 CL0123