Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1406 ATGGTGTGTGGTATCTGTCATTTTCCCTCGGCCCCGGAGGACTGTGAAATCTTTCTCTCTGCTATTCTTTTCTGCACACTTGGTAAAACGACAGCAATGGCCCTCTACAGCTCCAACAGTCTTCTTCTTCTTCTTCACCACAAACCCAAGAGCAGCTGCGTCACTGCACCCATATCAGCTTCTCTTAGTCCTGGACTAAAGACTTGGACAGAAGGCAATCATGTTGGTCTGGGCTTTGAAGGGACCAAGGAAAGAATCAAGAAGATGTTTGACAAGGTTGAGCTTTCGGTATCTTCATATGACACAGCTTGGGTTGCTATGGTCCCTTCTCCATATTCCTCACAGGCCCCATACTTCCCGGAGTGTGTGAATTGGTTATTGGAAAATCAGTCTCATGATGGCTCATGGGGTCTTCCTCATCCCCATCCCATGTTAGTCAAAGATGCTCTTTCATCTACTTTGGCATCTGTCCTTGCACTCAAGCGATGGGGTGTTGGTGAAGAGCAAAGGAACAAGGGGCTCTGGTTTATTGCATCCAATTTTGCTTCAGTTAGCGATGAGAAACAACATTCTCCAATTGGATTCGATATAATATTTCCTGGTATGATTGAGTATGCCAAAGAATTAGATTTGAACCTCCCTTTGGGGCAAAGAGATGTAGATGCTATGCTTCAGAAGAGGGATTTGGAGCTCAAAGGAAGCTTGGGAAGCAACACTAAGAGCAGAGAAGCCTACTTAGCATATATTTCGGAAGGAATGGGAAGGTTACAAGACTGGGAAATGGTTATGAAATATCAGATGAAGAATGGGTCTCTGCTCAATTCACCTTCTGCCACAGCAGCTGCTCTTTCTCACCTTCAAAATGCGGGTTGTCTGAATTACCTTCGATCTCTTTTAGAGAAGTTTGGGAATGCAGGTACCGACCTCCCTCCACATTCTTCTGTAGCATGCTGTGTATTTAAATTTCATCCTCTAACCTGTATCGGTTTTCTTCTATTGATCTCTCCAGTCCCAACAGTGTATCCTCTAGATTTATATGCTCGTTTATGTTTGGTTGACAATCTTGAAAGGTTGGGAATTGATCGGTATTTTAGGATGGAGATCAGAAGTGTATTGGATGAAACATACAGATGCTGGCTGCAGAGGGAGGAAGAGATATTTGCAGACAGAGCCACCTGTGCAATCGCATTTCGGATACTACGTTTAAATGGATATGACATCTCTTCAGTTCCATTAGCTCAATTTGCTGAAGACGATCAGTATTTCAAGTTTGGACAAGATTTTAAGGACTTGGGGGCTGCCCTTGAATTATTTAGGGCTTCAGAGATGATTATACACCCAGATGAAGTGGTTCTGGAGAAACAAAACTCATGGTCAAGTCATTTTCTAAGACAGGGACTATCGAACAGTTCAATTCATGCAGATAGACTCAATAAGTACATTGCCCAAGAGGTGGAGGATGCTCTTAGGTTTCCCTACTACGCAAATTTGGATCGCATAGCAAACAGAAGAAGTATTGAGCATTATAATGTAGATGATACAAGGATATTAAAAACTGCATATCGCTCTTCACATGTCTGCAACAAAGATTTCCTAAAACTAGCAGTTGAAGACTTCAATTTCTGTCAATCAATACACCAAAACGAACTCAAACAACTTGAGAGGTGGATTATAGAGAACAGATTAGACAAGCTAAAGTTTGCGAGGCAGAAGCTGGCCTACTGTTACTTCTCTGCTGCAGCAACCATATTCTCTCCTGAACAATCTGATGCCCGCCTTTCGTGGGCCAAAAACAGTGTTCTCACAACTGTGGTTGATGACTTCTTTGACATTGGAGGCTCTGAAGAGGAGCTCCTAAACCTTATTCAACTGGTTGAGAAGTGGGATATAGATGTAGCCGTGGATTGTTGTTCTGAACAAGTTGAGATCGTTTTTTCAGCACTCCACAGCACAATATCTGAGATTGGAGTCAAAGCATCAGCATGGCAAGCCCGTAACGTGACCAGCCATATAATTGATATCTGGCTGAAGTTGCTAAGATCTATGTTACAAGAAGCTCAGTGGGTGAGTAATAAATCAGCTCCAACAATGGATGAATACATGACAAATGCATATGTATCCTTTGCTCTGGGACCAATTGTCCTCCCGGCGCTCTATTTTGTTGGTCCTAAGCTTTCAGAGGAGGTTGTTGAGGGACCTGAGTGCCATAAACTATATAAGCTTATGAGCACCTGTGGGCGTCTTTTGAATGATATCCACAGCTTTAAGAGGGAGTCCAAGGAAGGGAAAGCGAATGCTCTAGCACTACACATGATACATGGCAATGGTGTCACTACTGAAGAACAGGCCATCAGAGAGATGAAGGGTTTAGTTAAGAGTCAGAGGAGAGAACTTCAGAGATTAGTTCTACAGGAGAAGGGTAGCACAGTACCAAGAATTTGCAAGGATTTATTTTGGAAAATGAGCAAAGTGTTGCACACATTTTATGAGAAAGACGATGGATTCACTTCACATGACATGCTCCGTGCTGTGAAATCAGTCATTTATGAACCTGTTCTTCTTGCTGAATTCTAA 2574 0.4274 MVCGICHFPSAPEDCEIFLSAILFCTLGKTTAMALYSSNSLLLLLHHKPKSSCVTAPISASLSPGLKTWTEGNHVGLGFEGTKERIKKMFDKVELSVSSYDTAWVAMVPSPYSSQAPYFPECVNWLLENQSHDGSWGLPHPHPMLVKDALSSTLASVLALKRWGVGEEQRNKGLWFIASNFASVSDEKQHSPIGFDIIFPGMIEYAKELDLNLPLGQRDVDAMLQKRDLELKGSLGSNTKSREAYLAYISEGMGRLQDWEMVMKYQMKNGSLLNSPSATAAALSHLQNAGCLNYLRSLLEKFGNAGTDLPPHSSVACCVFKFHPLTCIGFLLLISPVPTVYPLDLYARLCLVDNLERLGIDRYFRMEIRSVLDETYRCWLQREEEIFADRATCAIAFRILRLNGYDISSVPLAQFAEDDQYFKFGQDFKDLGAALELFRASEMIIHPDEVVLEKQNSWSSHFLRQGLSNSSIHADRLNKYIAQEVEDALRFPYYANLDRIANRRSIEHYNVDDTRILKTAYRSSHVCNKDFLKLAVEDFNFCQSIHQNELKQLERWIIENRLDKLKFARQKLAYCYFSAAATIFSPEQSDARLSWAKNSVLTTVVDDFFDIGGSEEELLNLIQLVEKWDIDVAVDCCSEQVEIVFSALHSTISEIGVKASAWQARNVTSHIIDIWLKLLRSMLQEAQWVSNKSAPTMDEYMTNAYVSFALGPIVLPALYFVGPKLSEEVVEGPECHKLYKLMSTCGRLLNDIHSFKRESKEGKANALALHMIHGNGVTTEEQAIREMKGLVKSQRRELQRLVLQEKGSTVPRICKDLFWKMSKVLHTFYEKDDGFTSHDMLRAVKSVIYEPVLLAEF* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1406 857 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 268 513 IPR008930 -
Vvi19g1406 857 SFLD Terpene Cyclase Like 1 N-term 81 305 - -
Vvi19g1406 857 SFLD Terpene Cyclase Like 1 N-term 312 523 - -
Vvi19g1406 857 Pfam Terpene synthase family, metal binding domain 532 796 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vvi19g1406 857 SFLD Isoprenoid Synthase Type I 528 852 - -
Vvi19g1406 857 Gene3D - 96 299 - -
Vvi19g1406 857 FunFam Ent-kaur-16-ene synthase, chloroplastic 542 854 - -
Vvi19g1406 857 FunFam Ent-copalyl diphosphate synthase, chloroplastic 330 539 - -
Vvi19g1406 857 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 80 851 - -
Vvi19g1406 857 CDD Terpene_cyclase_plant_C1 339 851 IPR044814 GO:0010333|GO:0016102
Vvi19g1406 857 Pfam Terpene synthase, N-terminal domain 258 489 IPR001906 GO:0010333|GO:0016829
Vvi19g1406 857 SFLD Terpene Cyclase Like 1 C Terminal Domain 528 852 IPR034741 -
Vvi19g1406 857 Coils Coil 784 804 - -
Vvi19g1406 857 FunFam cis-abienol synthase, chloroplastic 96 299 - -
Vvi19g1406 857 Gene3D Farnesyl Diphosphate Synthase 542 856 IPR008949 -
Vvi19g1406 857 SUPERFAMILY Terpenoid synthases 528 852 IPR008949 -
Vvi19g1406 857 Gene3D - 88 539 IPR036965 GO:0010333|GO:0016829
Vvi19g1406 857 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 99 316 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1406 Vvi-Chr19 23284514 23291080 Dispersed