Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1397 ATGCTAAACCCCTGCGTTTTGGGGTTTTTCCTTGTGACACAAGAAGCCGCGATCTCTGTTTACACATTTCGTCTGCGCTCCGAAGGCCGATCGATCTCCGAGTTCAAGTTTCAAGTTTGGATTACAGCTGTGACTGAAATTTTTGTTAGATTGAACATGAATTTCAACAATATCAAAGCTCCCAAGGTGCCAGGCGGTGGTGCAGCTTCTGCTTTGATTAAGCTGGGAGTTGTTGGTGGGCTTGGTTTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGTCATCGGGCCATTGTGTTTAATCGCATAGTTGGTGTCAAGGACAAGGTTTATCCCGAGGGAACTCACCTGATGATCCCATGGTTTGATAGGCCAGTCATCTATGATGTCCGTACGCGCCCTCATCTTGTGGAGAGTACTTCAGGGAGCCATGACCTCCAGATGGTAAAGATTGGTCTTCGAGTTCTTACCCGTCCTCTGCCAGACCAGTTACCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGAGTCCTGCCTTCAATAATTCATGAAACTCTGAAAGCTGTGGTTGCACAGTATAATGCTAGCCAGCTTATTACTCAGAGAGAGACTGTTAGTAGGGAAATACGTAAGTTATTGACAGAAAGGGCAGCCAATTTCAACATTGCTCTGGATGATGTGTCCATTACAAGCCTTACTTTTGGGAGGGAATTCACTGCTGCTATTGAAGCTAAACAAGTGGCTGCACAAGAGGCTGAAAGGGCCAAATTTGTTGTGGAAAAAGCTGAGCAAGACAAGAGGAGTGCTATTATCAGAGCACAGGGTGAGGCTAAGAGTGCCCAGCTGATAGGTCAAGCTATTGCCAACAATCCAGCATTCATCACGCTCAGAAAAATTGAAGCTTCCCGAGAAATTGCACATACAATTTCAAACTCTGCCAACAAGGTTTTCTTGAATTCCAATGATTTGTTGCTGAACCTTCAGGAAATGAATTTGCAGAGTGCCAGCTGA 1023 0.4487 MLNPCVLGFFLVTQEAAISVYTFRLRSEGRSISEFKFQVWITAVTEIFVRLNMNFNNIKAPKVPGGGAASALIKLGVVGGLGLYGAINSLYNVEGGHRAIVFNRIVGVKDKVYPEGTHLMIPWFDRPVIYDVRTRPHLVESTSGSHDLQMVKIGLRVLTRPLPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKLLTERAANFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQAIANNPAFITLRKIEASREIAHTISNSANKVFLNSNDLLLNLQEMNLQSAS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1397 340 CDD SPFH_prohibitin 90 284 IPR000163 GO:0016020
Vvi19g1397 340 Gene3D Band 7 domain 118 252 IPR036013 -
Vvi19g1397 340 SUPERFAMILY Band 7/SPFH domain 121 257 IPR036013 -
Vvi19g1397 340 FunFam Prohibitin 2 118 252 - -
Vvi19g1397 340 Coils Coil 249 269 - -
Vvi19g1397 340 PANTHER PROHIBITIN 53 336 IPR000163 GO:0016020
Vvi19g1397 340 Pfam SPFH domain / Band 7 family 92 267 IPR001107 -
Vvi19g1397 340 SMART PHB_4 89 250 IPR001107 -
Vvi19g1397 340 PRINTS Prohibitin signature 174 192 IPR000163 GO:0016020
Vvi19g1397 340 PRINTS Prohibitin signature 220 239 IPR000163 GO:0016020
Vvi19g1397 340 PRINTS Prohibitin signature 151 170 IPR000163 GO:0016020
Vvi19g1397 340 PRINTS Prohibitin signature 268 284 IPR000163 GO:0016020
Vvi19g1397 340 PRINTS Prohibitin signature 245 268 IPR000163 GO:0016020
Vvi19g1397 340 PRINTS Prohibitin signature 133 149 IPR000163 GO:0016020
Vvi19g1397 340 PRINTS Prohibitin signature 197 213 IPR000163 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1397 Vvi-Chr19 23186135 23190573 Dispersed