Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1394 ATGTCTTCAGAAATGGTAGCTTGTATTGCAGTTGAGTCTTTATCAATCCTAGAGAAGACGCACTCACGAGGTTATGTGCATGGAGATGTAAAATCGGAAAACTTTTTACTGGGCAAGCCATCTACACCACAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGCGACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGAGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAACAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTTCTTCTTGCCAAACGATTTTTATATCTCCTTTGTTTTTAA 366 0.4098 MSSEMVACIAVESLSILEKTHSRGYVHGDVKSENFLLGKPSTPQEKKLFLVDLGLATKWRDSANGQHVEYDQRPDMFRGTVRYASVHAHLGRTANRRDDLESLAYTLIFLLAKRFLYLLCF* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1394 121 PANTHER CASEIN KINASE-RELATED 1 114 - -
Vvi19g1394 121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Vvi19g1394 121 Pfam Fungal protein kinase 17 109 IPR040976 -
Vvi19g1394 121 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
Vvi19g1394 121 SUPERFAMILY Protein kinase-like (PK-like) 2 117 IPR011009 -
Vvi19g1394 121 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1394 Vvi-Chr19 23165739 23166104 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vvi19g1394 Pkinase_fungal 8.3e-09 CL0016